Giulia Gallerani

@irst.emr.it

Biosciences Laboratory
Istituto Scientifico Romagnolo per lo Studio e la Cura



                    

https://researchid.co/giulia.gallerani

EDUCATION

April 2016 PhD in Medical Sciences Speciality, with scholarship granted by MIUR (young found) Alma Mater Studiorum University of Bologna.

March 2012 Master's thesis with Prof. Dott. Davide Ferrari (University of Ferrara) at the faculty of Mathematical, Physical and Natural Sciences, University of Ferrara, Italy. Title 'DEPArray: a new approach for the study of circulating tumor cells'. Secondary Supervisors: Dr. Francesco Fabbri and Dr. Wainer Zoli (Irccs IRST, Meldola, Italy). Final grade: 110/110 CUM LAUDE.

October 2008 Undergraduate degree in Biology, course of study Molecular Biology, at the faculty of Methamatical, Physical and Natural Sciences, University of Ferrara, Italy. Final year research project in molecular and cellular biology under the supervision of Prof. Dr. Paolo Pinton. Final grade: 104/110.

RESEARCH INTERESTS

I work in the circulating tumor cells research (CTC) group of the IRCCS-IRST biosciences laboratory. Our group pursues investigations of tumor cells that invade the circulatory system representing a potential cause of metastasis. In particular, my researches focus on CTCs in metastatic and non-metastatic oesophageal cancer. We study oesophageal CTCs phenotipically using the DEPArray system, a lab-on-a-chip based technology. On isolated single CTCs we perform next generation single cell analysis to study circulating tumor cells heterogeneity.
I was one of the creators of the scientific-crowdfunding campaign "TRACe" whose purpose was to raise funds for research on circulating tumor cells. TRACe was the first italian crodfunding campaign from a research institute for oncology research.
I have also gained experience FACS Canto flow cytometer (BD) for both Immunophenotyping and apoptotic assay, cell culture techniques for both the adherent and in-suspension.

23

Scopus Publications

850

Scholar Citations

10

Scholar h-index

11

Scholar i10-index

Scopus Publications


  • ARID1A in cancer: Friend or foe?
    Beatrice Fontana, Giulia Gallerani, Irene Salamon, Ilaria Pace, Roberta Roncarati, and Manuela Ferracin

    Frontiers Media SA
    ARID1A belongs to a class of chromatin regulatory proteins that function by maintaining accessibility at most promoters and enhancers, thereby regulating gene expression. The high frequency of ARID1A alterations in human cancers has highlighted its significance in tumorigenesis. The precise role of ARID1A in cancer is highly variable since ARID1A alterations can have a tumor suppressive or oncogenic role, depending on the tumor type and context. ARID1A is mutated in about 10% of all tumor types including endometrial, bladder, gastric, liver, biliopancreatic cancer, some ovarian cancer subtypes, and the extremely aggressive cancers of unknown primary. Its loss is generally associated with disease progression more often than onset. In some cancers, ARID1A loss is associated with worse prognostic features, thus supporting a major tumor suppressive role. However, some exceptions have been reported. Thus, the association of ARID1A genetic alterations with patient prognosis is controversial. However, ARID1A loss of function is considered conducive for the use of inhibitory drugs which are based on synthetic lethality mechanisms. In this review we summarize the current knowledge on the role of ARID1A as tumor suppressor or oncogene in different tumor types and discuss the strategies for treating ARID1A mutated cancers.

  • From phenotypical investigation to RNA-sequencing for gene expression analysis: A workflow for single and pooled rare cells
    Tania Rossi, Davide Angeli, Giovanni Martinelli, Francesco Fabbri, and Giulia Gallerani

    Frontiers Media SA
    Combining phenotypical and molecular characterization of rare cells is challenging due to their scarcity and difficult handling. In oncology, circulating tumor cells (CTCs) are considered among the most important rare cell populations. Their phenotypic and molecular characterization is necessary to define the molecular mechanisms underlying their metastatic potential. Several approaches that require cell fixation make difficult downstream molecular investigations on RNA. Conversely, the DEPArray technology allows phenotypic analysis and handling of both fixed and unfixed cells, enabling a wider range of applications. Here, we describe an experimental workflow that allows the transcriptomic investigation of single and pooled OE33 cells undergone to DEPArray analysis and recovery. In addition, cells were tested at different conditions (unfixed, CellSearch fixative (CSF)- and ethanol (EtOH)-fixed cells). In a forward-looking perspective, this workflow will pave the way for novel strategies to characterize gene expression profiles of rare cells, both single-cell and low-resolution input.

  • Dissecting Molecular Heterogeneity of Circulating Tumor Cells (CTCs) from Metastatic Breast Cancer Patients through Copy Number Aberration (CNA) and Single Nucleotide Variant (SNV) Single Cell Analysis
    Tania Rossi, Davide Angeli, Michela Tebaldi, Pietro Fici, Elisabetta Rossi, Andrea Rocca, Michela Palleschi, Roberta Maltoni, Giovanni Martinelli, Francesco Fabbri,et al.

    MDPI AG
    Circulating tumor cells’ (CTCs) heterogeneity contributes to counteract their introduction in clinical practice. Through single-cell sequencing we aim at exploring CTC heterogeneity in metastatic breast cancer (MBC) patients. Single CTCs were isolated using DEPArray NxT. After whole genome amplification, libraries were prepared for copy number aberration (CNA) and single nucleotide variant (SNV) analysis and sequenced using Ion GeneStudio S5 and Illumina MiSeq, respectively. CTCs demonstrate distinctive mutational signatures but retain molecular traces of their common origin. CNA profiling identifies frequent aberrations involving critical genes in pathogenesis: gains of 1q (CCND1) and 11q (WNT3A), loss of 22q (CHEK2). The longitudinal single-CTC analysis allows tracking of clonal selection and the emergence of resistance-associated aberrations, such as gain of a region in 12q (CDK4). A group composed of CTCs from different patients sharing common traits emerges. Further analyses identify losses of 15q and enrichment of terms associated with pseudopodium formation as frequent and exclusive events. CTCs from MBC patients are heterogeneous, especially concerning their mutational status. The single-cell analysis allows the identification of aberrations associated with resistance, and is a candidate tool to better address treatment strategy. The translational significance of the group populated by similar CTCs should be elucidated.

  • Case Report: Analysis of Plasma Extracellular Vesicles in a Triple Negative Spindle-Cell Metaplastic Breast Cancer Patient
    Ivan Vannini, Milena Urbini, Mattia Melloni, Tania Rossi, Giulia Gallerani, Michela Palleschi, Irene Azzali, Maurizio Puccetti, Giovanni Martinelli, and Francesco Fabbri

    Frontiers Media SA
    Metaplastic breast cancer (MpBC) is a rare tumor representing 1% of all breast malignancies. The prognosis of this histologic subtype is actually poor and there are no current clear-cut therapeutic guidelines. Hence, despite its uniqueness, its aggressive prognostic profile strongly encourages further studies to identify new markers and therapeutic targets. Herein, we report a case of 32-years-old patient affected with of triple negative spindle-shaped MpBC. The research of molecular targets on the primary tumor did not allow performing an effective therapeutic choice. Extracellular Vesicles (EVs) are under intense study as new potential pathophysiological markers and targets for therapeutic applications, in different tumors for their role in tumor onset, progression and aggressiveness. Here, we examined the involvement of EVs in this case, to look into the MpBC microenvironment willing to identify new potential molecular targets, pathways of aggressiveness, and markers of prognosis and therapeutic efficacy. Firstly, we characterized MpBC patient EV dimensions and surface proteins. Moreover, we analyzed the EV RNA cargo supposed to be delivered to nearby and distant recipient cells. Interestingly, we observed a dysregulation EV-contained miRNAs, which could determine an increased expression of oncogenes in the tumor microenvironment, probably enabling cancer progression. These data suggest that the characterization of miRNA cargo of EVs could be important for the identification of new markers and for the application of future new target therapies.

  • Cna profiling of single ctcs in locally advanced esophageal cancer patients during therapy highlights unexplored molecular pathways
    Giulia Gallerani, Tania Rossi, Martina Valgiusti, Davide Angeli, Pietro Fici, Sara De Fanti, Erika Bandini, Claudia Cocchi, Giovanni Luca Frassineti, Massimiliano Bonafè,et al.

    MDPI AG
    Background: Here, we monitored the evolution of CTCs spread in 11 patients affected by locally advanced EC who were undergoing therapy. Methods: In this perspective study, we designed multiple blood biopsies from individual patients: before and after neoadjuvant chemo-radio therapy and after surgery. We developed a multi-target array, named Grab-all assay, to estimate CTCs for their epithelial (EpCAM/E-Cadherin/Cytokeratins) and mesenchymal/stem (N-Cadherin/CD44v6/ABCG2) phenotypes. Identified CTCs were isolated as single cells by DEPArray, subjected to whole genome amplification, and copy number aberration (CNA) profiles were determined. Through bioinformatic analysis, we assessed the genomic imbalance of single CTCs, investigated specific focal copy number changes previously reported in EC and aberrant pathways using enrichment analysis. Results: Longitudinal monitoring allowed the identification of CTCs in at least one time-point per patient. Through single cell CNA analysis, we revealed that CTCs showed significantly dynamic genomic imbalance during treatment. Individual CTCs from relapsed patients displayed a higher degree of genomic imbalance relative to disease-free patients’ groups. Genomic aberrations previously reported in EC occurred mostly in post-neoadjuvant therapy CTCs. In-depth analysis showed that networks enrichment in all time-point CTCs were inherent to innate immune system. Transcription/gene regulation, post-transcriptional and epigenetic modifications were uniquely affected in CTCs of relapsed patients. Conclusions: Our data add clues to the comprehension of the role of CTCs in EC aggressiveness: chromosomal aberrations on genes related to innate immune system behave as relevant to the onset of CTC-status, whilst pathways of transcription/gene regulation, post-transcriptional and epigenetic modifications seem linked to patients’ outcome.

  • Early Detection and Investigation of Extracellular Vesicles Biomarkers in Breast Cancer
    Erika Bandini, Tania Rossi, Emanuela Scarpi, Giulia Gallerani, Ivan Vannini, Samanta Salvi, Irene Azzali, Mattia Melloni, Sara Salucci, Michela Battistelli,et al.

    Frontiers Media SA
    Breast cancer (BC) is the most commonly diagnosed malignant tumor in women worldwide, and the leading cause of cancer death in the female population. The percentage of patients experiencing poor prognosis along with the risk of developing metastasis remains high, also affecting the resistance to current main therapies. Cancer progression and metastatic development are no longer due entirely to their intrinsic characteristics, but also regulated by signals derived from cells of the tumor microenvironment. Extracellular vesicles (EVs) packed with DNA, RNA, and proteins, are the most attractive targets for both diagnostic and therapeutic applications, and represent a decisive challenge as liquid biopsy-based markers. Here we performed a study based on a multiplexed phenotyping flow cytometric approach to characterize BC-derived EVs from BC patients and cell lines, through the detection of multiple antigens. Our data reveal the expression of EVs-related biomarkers derived from BC patient plasma and cell line supernatants, suggesting that EVs could be exploited for characterizing and monitoring disease progression.

  • Circulating tumor cells as a tool to untangle the breast cancer heterogeneity issue
    Tania Rossi, Giulia Gallerani, Giovanni Martinelli, Roberta Maltoni, and Francesco Fabbri

    MDPI AG
    Breast cancer (BC) is a disease characterized by high degrees of heterogeneity at morphologic, genomic, and genetic levels, even within the same tumor mass or among patients. As a consequence, different subpopulations coexist and less represented clones may have a selective advantage, significantly influencing the outcome of BC patients. Circulating tumor cells (CTCs) represent a rare population of cells with a crucial role in metastatic cascade, and in recent years have represented a fascinating alternative to overcome the heterogeneity issue as a “liquid biopsy”. However, besides the raw enumeration of these cells in advanced epithelial tumors, there are no CTC-based assays applied in the clinical practice to improve personalized medicine. In this review, we report the latest findings in the field of CTCs for intra-tumoral heterogeneity unmasking in BC, supporting the need to deepen their analysis to investigate their role in metastatic process and include the molecular characterization in the clinical practice. In the future, CTCs will be helpful in monitoring patients during treatment, as well as to better address therapeutic strategies.

  • Case Report: Analysis of Circulating Tumor Cells in a Triple Negative Spindle-Cell Metaplastic Breast Cancer Patient
    Tania Rossi, Michela Palleschi, Davide Angeli, Michela Tebaldi, Giovanni Martinelli, Ivan Vannini, Maurizio Puccetti, Francesco Limarzi, Roberta Maltoni, Giulia Gallerani,et al.

    Frontiers Media SA
    Circulating tumor cells (CTCs) are a rare population of cells found in the bloodstream and represent key players in the metastatic cascade. Their analysis has proved to provide further core information concerning the tumor. Herein, we aim at investigating CTCs isolated from a 32-year-old patient diagnosed with triple negative spindle-shaped metaplastic breast cancer (MpBC), a rare tumor poorly responsive to therapies and with a dismal prognosis. The molecular analysis performed on the primary tumor failed to underline effective actionable targets to address the therapeutic strategy. Besides the presence of round-shaped CTCs, cells with a spindle shape were present as well, and through molecular analysis, we confirmed their malignant nature. This aspect was coherent with the primary tumor histology, proving that CTCs are released regardless of their morphology. Copy number aberration (CNA) profiling and variant analysis using next-generation sequencing (NGS) showed that these cells did not harbor the alterations exhibited by the primary tumor (PIK3CA G1049A mutation, MYC copy number gain). However, despite the great heterogeneity observed, the amplification of regions involved in metastasis emerged (8q24.22–8q24.23). Our findings support the investigation of CTCs to identify alterations that could have a role in the metastatic process. To the best of our knowledge, this is the first examination of CTCs in an MpBC patient.

  • Single-cell NGS-based analysis of copy number alterations reveals new insights in circulating tumor cells persistence in early-stage breast cancer
    Tania Rossi, Giulia Gallerani, Davide Angeli, Claudia Cocchi, Erika Bandini, Pietro Fici, Michele Gaudio, Giovanni Martinelli, Andrea Rocca, Roberta Maltoni,et al.

    MDPI AG
    Circulating tumor cells (CTCs) are a rare population of cells representing a key player in the metastatic cascade. They are recognized as a validated tool for the identification of patients with a higher risk of relapse, including those diagnosed with breast cancer (BC). However, CTCs are characterized by high levels of heterogeneity that also involve copy number alterations (CNAs), structural variations associated with gene dosage changes. In this study, single CTCs were isolated from the peripheral blood of 11 early-stage BC patients at different time points. A label-free enrichment of CTCs was performed using OncoQuick, and single CTCs were isolated using DEPArray. Libraries were prepared from single CTCs and DNA extracted from matched tumor tissues for a whole-genome low-coverage next-generation sequencing (NGS) analysis using the Ion Torrent S5 System. The analysis of the CNA burden highlighted that CTCs had different degrees of aberration based on the time point and subtype. CTCs were found even six months after surgery and shared CNAs with matched tumor tissue. Tumor-associated CNAs that were recurrent in CTCs were patient-specific, and some alterations involved regions associated with BC and survival (i.e., gains at 1q21-23 and 5p15.33). The enrichment analysis emphasized the involvement of aberrations of terms, associated in particular with interferon (IFN) signaling. Collectively, our findings reveal that these aberrations may contribute to understanding the molecular mechanisms involving CTC-related processes and their survival ability in occult niches, supporting the goal of exploiting their application in patients’ surveillance and follow-up.

  • Impressive long-term response with chemo-endocrine therapy in a premenopausal patient with metastatic breast cancer: A case report
    Roberta Maltoni, Michela Palleschi, Giulia Gallerani, Sara Bravaccini, Lorenzo Cecconetto, Elisabetta Melegari, Mattia Altini, and Andrea Rocca

    Ovid Technologies (Wolters Kluwer Health)
    Abstract Rationale: Patients with, or who develop, metastatic breast cancer have a 5-year relative survival of about 25%. Endocrine therapy clearly improves outcomes in patients with estrogen receptor-positive breast cancer. In the metastatic setting, the primary goal of treatment is to maintain long-term disease control with good quality of life. Rarely, exceptional responders achieve durable disease control, and potential cures cannot be ruled out. Patient Concerns: We report the case of a 39-year-old woman with primary breast cancer and associated synchronous bone metastases, who experienced a disease response of 12 years with hormonal therapy as maintenance after first line chemotherapy, with a good toxicity profile. Diagnosis: The patient was diagnosed with estrogen receptor + human epidermal growth factor receptor 2 (HER2)− metastatic breast cancer with synchronous bone metastases. Interventions: This patient was treated with chemotherapy for 6 cycles as a first-line therapy following by endocrine treatment given as a maintenance therapy. Outcomes: Our patient experienced a progression-free survival >12 years with an exceptionally good quality of life. Lessons: Our anecdotal experience highlights the existence of exceptional responders among patients with hormone receptor-positive metastatic breast cancer, who achieve clinical remission and durable disease control with endocrine therapy. Being able to identify these patients could help in the selection of the best treatment option among the many available.

  • Adipocytes and micrornas crosstalk: A key tile in the mosaic of breast cancer microenvironment
    Erika Bandini, Tania Rossi, Giulia Gallerani, and Francesco Fabbri

    MDPI AG
    Breast cancer (BC) is a disease characterized by a high grade of heterogeneity. Consequently, despite the great achievements obtained in the last decades, most of the current therapeutic regimens still fail. The identification of new molecular mechanisms that will increase the knowledge of all steps of tumor initiation and growth is mandatory in finding new clinical strategies. The BC microenvironment, consisting of endothelial cells, fibroblasts, immune cells and adipocytes, plays an essential role in regulating BC development, and recently it has gained great attention in the scientific community. In particular, adipose tissue is emerging as an important target to investigate among mammary gland components. The mechanisms underlying BC progression driven by adipocytes are predominantly unexplored, especially that involving the switch from normal adipocytes to the so-called cancer-associated adipocytes (CAAs). MicroRNAs (miRNAs), a class of gene expression modulators, have emerged as the regulators of key oncogenes and tumor suppressor genes that affect multiple pathways of the tumor microenvironment and adipose tissue. This review concerns a presentation of the role of adipocytes in breast tissue, and describes the most recent discoveries about the interplay between adipocytes and miRNAs, which collaborate in the arrangement of a pro-inflammatory and cancerous microenvironment, laying the foundations for new concepts in the prevention and treatment of BC.

  • Stemness underpinning all steps of human colorectal cancer defines the core of effective therapeutic strategies
    Alberto Visioli, Fabrizio Giani, Nadia Trivieri, Riccardo Pracella, Elide Miccinilli, Maria Grazia Cariglia, Orazio Palumbo, Andrea Arleo, Fabio Dezi, Massimiliano Copetti,et al.

    Elsevier BV
    Background Despite their lethality and ensuing clinical and therapeutic relevance, circulating tumor cells (CTCs) from colorectal carcinoma (CRC) remain elusive, poorly characterized biological entities. Methods and findings We perfected a cell system of stable, primary lines from human CRC showing that they possess the full complement of ex- and in-vivo, in xenogeneic models, characteristics of CRC stem cells (CCSCs). Here we show how tumor-initiating, CCSCs cells can establish faithful orthotopic phenocopies of the original disease, which contain cells that spread into the circulatory system. While in the vascular bed, these cells retain stemness, thus qualifying as circulating CCSCs (cCCSCs). This is followed by the establishment of lesions in distant organs, which also contain resident metastatic CCSCs (mCCSCs). Interpretation Our results support the concept that throughout all the stages of CRC, stemness is retained as a continuous property by some of their tumor cells. Importantly, we describe a useful standardized model that can enable isolation and stable perpetuation of human CRC's CCSCs, cCCSCs and mCCSCs, providing a useful platform for studies of CRC initiation and progression that is suitable for the discovery of reliable stage-specific biomarkers and the refinement of new patient-tailored therapies. Fund This work was financially supported by grants from “Ministero della Salute Italiano”(GR-2011-02351534, RC1703IC36 and RC1803IC35) to Elena Binda and from “Associazione Italiana Cancro” (IG-14368) Angelo L. Vescovi. None of the above funders have any role in study design, data collection, data analysis, interpretation, writing the project.

  • Crowdfunding for cancer research: the TRACe campaign as an example
    Giulia Gallerani, Pietro Fici, Alessandro Coatti, Paolo Mariotti, Francesca Passeri, and Luca Battistelli

    Elsevier BV

  • Characterization of tumor cells using a medical wire for capturing circulating tumor cells: A 3D approach based on immunofluorescence and DNA FISH
    Giulia Gallerani, Claudia Cocchi, Martine Bocchini, Filippo Piccinini, and Francesco Fabbri

    MyJove Corporation
    Circulating tumor cells (CTCs) are associated with poor survival in metastatic cancer. Their identification, phenotyping, and genotyping could lead to a better understanding of tumor heterogeneity and thus facilitate the selection of patients for personalized treatment. However, this is hampered because of the rarity of CTCs. We present an innovative approach for sampling a high volume of the patient blood and obtaining information about presence, phenotype, and gene translocation of CTCs. The method combines immunofluorescence staining and DNA fluorescent-in-situ-hybridization (DNA FISH) and is based on a functionalized medical wire. This wire is an innovative device that permits the in vivo isolation of CTCs from a large volume of peripheral blood. The blood volume screened by a 30-min administration of the wire is approximately 1.5-3 L. To demonstrate the feasibility of this approach, epithelial cell adhesion molecule (EpCAM) expression and the chromosomal translocation of the ALK gene were determined in non-small-cell lung cancer (NSCLC) cell lines captured by the functionalized wire and stained with an immuno-DNA FISH approach. Our main challenge was to perform the assay on a 3D structure, the functionalized wire, and to determine immuno-phenotype and FISH signals on this support using a conventional fluorescence microscope. The results obtained indicate that catching CTCs and analyzing their phenotype and chromosomal rearrangement could potentially represent a new companion diagnostic approach and provide an innovative strategy for improving personalized cancer treatments.

  • DNA ploidy and S-phase fraction analysis in peritoneal carcinomatosis from ovarian cancer: Correlation with clinical pathological factors and response to chemotherapy
    Silvia Carloni, Giulia Gallerani, Anna Tesei, Emanuela Scarpi, Giorgio Maria Verdecchia, Salvatore Virzì, Francesco Fabbri, and Chiara Arienti

    Informa UK Limited
    Objective We investigated the correlation between ploidy or S-phase fraction (SPF) and the clinical pathological characteristics of patients with peritoneal carcinomatosis from ovarian cancer. We also assessed their relation with the in vivo and in vitro response to several chemotherapeutic agents. Patients and methods Fifty-three patients with peritoneal carcinomatosis from ovarian cancer were enrolled. Frozen tumor tissue was dissociated by a detergent–trypsin method, and the resulting cell suspension was stained with RNase A and propidium iodide. Samples were then analyzed for ploidy and SPF by flow cytometry. Fresh tumor tissue was dissociated by enzymatic digestion, and cells were exposed to different concentrations of cisplatin, adriamycin, carboplatin, gemcitabine and taxol for 72 hours. In vitro drug sensitivity was then measured using the sulforhodamine B assay. Results No significant correlation was found between ploidy or SPF and patient characteristics, even though primary carcinomas were mainly hyperdiploid and more proliferative than recurrent tumors. SPF differed significantly among ploidy categories (P=0.01), and high SPF was associated with short-term survival (P=0.48). Patients with multiploid tumors were the most resistant to platinum-based chemotherapy, whereas those with hyperdiploid tumors were the most responsive. In vitro multiploid tumors were the least sensitive, while hypodiploid samples showed the highest sensitivity to the tested drugs. Sensitivity to adriamycin was significantly correlated with ploidy (P=0.03), whereas sensitivity to taxol was correlated with SPF (P=0.04). Conclusion Our results indicate that ploidy and SPF could facilitate the choice of therapy for patients with peritoneal carcinomatosis.

  • Circulating tumor cells: Back to the future
    Giulia Gallerani, Pietro Fici, and Francesco Fabbri

    Frontiers Media SA
    Circulating tumor cells (CTCs) are rare and heterogeneous cells found in the peripheral blood of cancer patients. They are supposed to be a central component of metastatic dissemination and have been correlated with prognosis, progression-free survival, and treatment efficacy in different solid tumors (1, 2). Despite CTC significance, studies conducted on them still present considerable issues. In particular, regarding to how CTCs should be investigated and to their actual metastatic competence and tumor heterogeneity reflecting dissimilar cancer cell subpopulations. Importantly, CTCs’ clinical utility has not been demonstrated and they cannot be utilized to guide therapeutic decisions. As reviewed by others (3), recent and currently ongoing clinical trials are trying to determine the predictive role of CTCs, but they are apparently failing to support definitive conclusions. Nevertheless, the results of these trials could shed a light on the real possibilities of CTCs. In our opinion, CTC troubleshootings will depend on what scientific community will explore about CTCs and the metastatic process. Only a deeper insight in base knowledge about CTCs and their role in tumor biology may help us in overcoming such hurdles.

  • Splicing factor ratio as an index of epithelial-mesenchymal transition and tumor aggressiveness in breast cancer
    Pietro Fici, Giulia Gallerani, Anne-Pierre Morel, Laura Mercatali, Toni Ibrahim, Emanuela Scarpi, Dino Amadori, Alain Puisieux, Michel Rigaud, and Francesco Fabbri

    Impact Journals, LLC
    Epithelial-to-mesenchymal transition (EMT) has been shown to be associated with tumor progression and metastasis. During this process in breast cancer, a crucial role is played by alternative splicing systems. To identify a new early prognostic marker of metastasis, we evaluated EMT-related gene expression in breast cell lines, and in primary tumor tissue from 31 patients with early breast cancer, focusing our attention on EMT-related splicing factors ESRP1, ESRP2 and RBFOX2. Results showed that the expression patterns of these genes were indicative of the onset of EMT in in-vitro models, but not in tissue samples. However, the ratio between ESRP1 or ESRP2 and RBFOX2 significantly decreased during EMT and positively correlated with the EMT-specific phenotype in cell models, representing a promising prognostic markers. Low ESRP1/RBFOX2 ratio value was associated with a higher risk of metastasis (p < 0.005) in early breast cancer patients, regardless other clinical features. A cut-off of ratio of 1.067 was determined by ROC curve analysis (AUC 0.8375; 95% CI 0.6963–0.9787). Our study show evidence that a decrease in this ratio correlates with cancer progression. The results provide a rationale for using ESRP1/RBFOX2 ratio as a new prognostic biomarker for the early prediction of metastatic potential in breast cancer.

  • Circulating tumor cells in the adenocarcinoma of the esophagus
    Giulia Gallerani and Francesco Fabbri

    MDPI AG
    Circulating tumor cells (CTCs) are elements of indisputable significance as they seem to be responsible for the onset of metastasis. Despite this, research into CTCs and their clinical application have been hindered by their rarity and heterogeneity at the molecular and cellular level, and also by a lack of technical standardization. Esophageal adenocarcinoma (EAC) is a highly aggressive cancer that is often diagnosed at an advanced stage. Its incidence has increased so much in recent years that new diagnostic, prognostic and predictive biomarkers are urgently needed. Preliminary findings suggest that CTCs could represent an effective, non-invasive, real-time assessable biomarker in all stages of EAC. This review provides an overview of EAC and CTC characteristics and reports the main research results obtained on CTCs in this setting. The need to carry out further basic and translational research in this area to confirm the clinical usefulness of CTCs and to provide oncologists with a tool to improve therapeutic strategies for EAC patients was herein highlighted.

  • CTCs in early breast cancer: A path worth taking
    Roberta Maltoni, Giulia Gallerani, Pietro Fici, Andrea Rocca, and Francesco Fabbri

    Elsevier BV
    Circulating tumor cells (CTCs) are cellular elements of undeniable significance that spread from the tumor mass into the peripheral blood and constitute one of the main vehicles for disease diffusion. Their rarity, in addition to a number of molecular and cellular features, has severely impaired research and exploitation. CTCs have been evaluated in early breast cancer (EBC), although long from being fully accepted in this field also due to a lack of technical standardization. CTCs hold promise to be a powerful non-invasive real-time measurable biomarker in all disease stages. This hypothesis is particularly appealing in the adjuvant setting of breast cancer, as it still lacks a marker that could play a central role in monitoring disease-free intervals, predicting early relapse and guiding drug selection. This review aimed to discuss CTC characteristics and show the main results of CTC-research in EBC setting, stating the urgency to continue basic and translational research in this field to definitely translate this marker from bench to bedside.

  • Circulating tumor cells in early breast cancer: A connection with vascular invasion
    Roberta Maltoni, Pietro Fici, Dino Amadori, Giulia Gallerani, Claudia Cocchi, Martina Zoli, Andrea Rocca, Lorenzo Cecconetto, Secondo Folli, Emanuela Scarpi,et al.

    Elsevier BV
    Although circulating tumor cells (CTCs) have been studied in early breast cancer (EBC), their value in this setting is still not fully understood. We isolated and studied CTCs in the peripheral blood (PB) of 48 EBC patients pre-surgery and one and 6 months post-surgery using an approach involving EpCAM-independent enrichment and a dielectrophoresis-based device. Method feasibility and the correlation between CTCs and primary tumor features were evaluated. CTCs were found in 27.1% of pre-surgery patients, 20.9% of patients one-month post-surgery, and about 33% of patients 6-months post-surgery. CTCs were recovered singly for further molecular characterization. Pre-surgery CTC-positive patients more frequently had negative prognostic features, i.e. high proliferation, large tumor dimension, lymph node positivity and negative receptor status than the other subgroup. In particular, vascular invasion showed a statistically significant correlation with CTC-positivity. Our procedure proved feasible and capable of recovering CTCs from EBC patients. Furthermore, our results suggest that CTCs may be linked to vascular invasion and to other known negative prognostic factors.

  • Circulating tumor cells and epithelial, mesenchymal and stemness markers: Characterization of cell subpopulations
    G. Barrière, P. Fici, G. Gallerani, F. Fabbri, W. Zoli and M. Rigaud


    Until now detection and numeration of circulating tumor cells (CTCs) were essentially used as a prognostic factor in cancer progression. To extend the role of these kinds of analysis, it seems necessary to improve analytical methods related to isolation and characterization of CTCs. Discrepancies between published results corroborates this requirement. In this review we suggest a combination of markers able to reach the goal. Moreover to improve the clinical utility of CTC analysis, particularly in the therapeutic follow up of the disease, epithelial mesenchymal transition (EMT) level of a global CTC population should be studied.

  • Detection and recovery of circulating colon cancer cells using a dielectrophoresis-based device: KRAS mutation status in pure CTCs
    Francesco Fabbri, Silvia Carloni, Wainer Zoli, Paola Ulivi, Giulia Gallerani, Pietro Fici, Elisa Chiadini, Alessandro Passardi, Giovanni L. Frassineti, Angela Ragazzini,et al.

    Elsevier BV
    The characterization of circulating tumor cells (CTCs) could substantially improve the management of cancer patients. However, their study is still a matter of debate, often due to lymphocyte contamination. In the present paper, an investigation of CTCs was carried out for the first time using DEPArray, a dielectrophoresis-based platform able to detect and sort pure CTCs. Analyses were conducted on peripheral blood (PB) samples from patients with metastatic colon cancer. After 100% pure cell recovery and whole genome amplification, KRAS gene mutation of CTCs was screened and compared to gene status in the primary tumor tissue. CTCs were found in 21 colon cancer patients (52.5%), with more than three tumor cells per 7.5 ml. KRAS gene mutation analysis, showed a mutational concordance between CTCs and primary tumor in 50% of matched cases. The present study demonstrates for the first time the feasibility of analyzing at the molecular level pure CTCs avoiding lymphocyte contamination using an innovative instrumentation, and a KRAS discordance between CTCs and primary tissue. Our results present dielectrophoresis-based procedures as a new standard in single cell analysis and recovery and invite careful reflection on the value of CTCs characterization.

RECENT SCHOLAR PUBLICATIONS

  • Settling the uncertainty about unconventional circulating tumor cells: Epithelial-to-mesenchymal transition, cell fusion and trogocytosis
    G Gallerani, T Rossi, M Ferracin, M Bonaf
    Int. Rev. Cell Mol. Biol 381, 99-111 2023

  • OPEN ACCESS EDITED BY
    A Kirmizis, I De La Serna, M Ferracin, R Roncarati, B Fontana, G Gallerani, ...
    Women in Cancer Molecular Targets and Therapeutics, Volume II: 2022, 298 2023

  • Synergic activity of FGFR2 and MEK inhibitors in the treatment of FGFR2-amplified cancers of unknown primary
    A Cavazzoni, I Salamon, C Fumarola, G Gallerani, N Laprovitera, ...
    medRxiv, 2023.03. 12.23287041 2023

  • Device and method for removing undesirable biological and/or chemical entities from biological fluids
    M Rigaud, Z Wainer, F Fabbri, G Gallerani, F Pietro
    US Patent 11,596,728 2023

  • ARID1A in cancer: Friend or foe?
    B Fontana, G Gallerani, I Salamon, I Pace, R Roncarati, M Ferracin
    Frontiers in Oncology 13, 1136248 2023

  • From phenotypical investigation to RNA-sequencing for gene expression analysis: A workflow for single and pooled rare cells
    T Rossi, D Angeli, G Martinelli, F Fabbri, G Gallerani
    Frontiers in Genetics 13, 1012191 2022

  • Dissecting molecular heterogeneity of circulating tumor cells (CTCs) from metastatic breast cancer patients through copy number aberration (CNA) and single nucleotide variant
    T Rossi, D Angeli, M Tebaldi, P Fici, E Rossi, A Rocca, M Palleschi, ...
    Cancers 14 (16), 3925 2022

  • Case Report: Analysis of Plasma Extracellular Vesicles in a Triple Negative Spindle-Cell Metaplastic Breast Cancer Patient
    I Vannini, M Urbini, M Melloni, T Rossi, G Gallerani, M Palleschi, I Azzali, ...
    Frontiers in Medicine 9, 827206 2022

  • CNA Profiling of Single CTCs in Locally Advanced Esophageal Cancer Patients during Therapy Highlights Unexplored Molecular Pathways
    G Gallerani, T Rossi, M Valgiusti, D Angeli, P Fici, S De Fanti, E Bandini, ...
    Cancers 13 (24), 6369 2021

  • Early detection and investigation of extracellular vesicles biomarkers in breast cancer
    E Bandini, T Rossi, E Scarpi, G Gallerani, I Vannini, S Salvi, I Azzali, ...
    Frontiers in Molecular Biosciences 8, 732900 2021

  • Circulating tumor cells as a tool to untangle the breast cancer heterogeneity issue
    T Rossi, G Gallerani, G Martinelli, R Maltoni, F Fabbri
    Biomedicines 9 (9), 1242 2021

  • Cancer of Unknown Primary: novel therapeutic opportunities from patient-derived cell cultures and in vivo models
    N Laprovitera, C Fumarola, E Porcellini, S Cairo, G Gallerani, ...
    Cancer Research 81 (13_Supplement), 3011-3011 2021

  • Case report: Analysis of circulating tumor cells in a triple negative spindle-cell metaplastic breast cancer patient
    T Rossi, M Palleschi, D Angeli, M Tebaldi, G Martinelli, I Vannini, ...
    Frontiers in Medicine 8, 689895 2021

  • Device and method for removing undesirable biological and/or chemical entities from biological fluids
    M Rigaud, Z Wainer, F Fabbri, G Gallerani, F Pietro
    US Patent 10,864,313 2020

  • Single-cell NGS-based analysis of copy number alterations reveals new insights in circulating tumor cells persistence in early-stage breast cancer
    T Rossi, G Gallerani, D Angeli, C Cocchi, E Bandini, P Fici, M Gaudio, ...
    Cancers 12 (9), 2490 2020

  • Impressive long-term response with chemo-endocrine therapy in a premenopausal patient with metastatic breast cancer: A case report
    R Maltoni, M Palleschi, G Gallerani, S Bravaccini, L Cecconetto, ...
    Medicine 99 (24), e20396 2020

  • Adipocytes and microRNAs crosstalk: a key tile in the mosaic of breast cancer microenvironment
    E Bandini, T Rossi, G Gallerani, F Fabbri
    Cancers 11 (10), 1451 2019

  • Stemness underpinning all steps of human colorectal cancer defines the core of effective therapeutic strategies
    A Visioli, F Giani, N Trivieri, R Pracella, E Miccinilli, MG Cariglia, ...
    EBioMedicine 44, 346-360 2019

  • Crowdfunding for cancer research: the TRACe campaign as an example
    G Gallerani, P Fici, A Coatti, P Mariotti, F Passeri, L Battistelli
    The Lancet Oncology 20 (5), 622-624 2019

  • Stemness Underpinning All Steps of Human Colorectal Cancer Defines the Core of Effective Therapeutic Strategies
    L Angelo Vescovi, F Giani, N Trivier, E Miccinilli, R Pracella, O Palumbo, ...
    2018

MOST CITED SCHOLAR PUBLICATIONS

  • Detection and recovery of circulating colon cancer cells using a dielectrophoresis-based device: KRAS mutation status in pure CTCs
    F Fabbri, S Carloni, W Zoli, P Ulivi, G Gallerani, P Fici, E Chiadini, ...
    Cancer letters 335 (1), 225-231 2013
    Citations: 250

  • Circulating tumor cells and epithelial, mesenchymal and stemness markers: characterization of cell subpopulations
    G Barriere, P Fici, G Gallerani, F Fabbri, W Zoli, M Rigaud
    Annals of translational medicine 2 (11) 2014
    Citations: 179

  • Epithelial mesenchymal transition: a double-edged sword
    G Barriere, P Fici, G Gallerani, F Fabbri, M Rigaud
    Clinical and translational medicine 4, 1-6 2015
    Citations: 153

  • Circulating tumor cells in early breast cancer: A connection with vascular invasion
    R Maltoni, P Fici, D Amadori, G Gallerani, C Cocchi, M Zoli, A Rocca, ...
    Cancer letters 367 (1), 43-48 2015
    Citations: 44

  • CTCs in early breast cancer: A path worth taking
    R Maltoni, G Gallerani, P Fici, A Rocca, F Fabbri
    Cancer letters 376 (2), 205-210 2016
    Citations: 36

  • Splicing factor ratio as an index of epithelial-mesenchymal transition and tumor aggressiveness in breast cancer
    P Fici, G Gallerani, AP Morel, L Mercatali, T Ibrahim, E Scarpi, D Amadori, ...
    Oncotarget 8 (2), 2423 2017
    Citations: 33

  • Single-cell NGS-based analysis of copy number alterations reveals new insights in circulating tumor cells persistence in early-stage breast cancer
    T Rossi, G Gallerani, D Angeli, C Cocchi, E Bandini, P Fici, M Gaudio, ...
    Cancers 12 (9), 2490 2020
    Citations: 27

  • Adipocytes and microRNAs crosstalk: a key tile in the mosaic of breast cancer microenvironment
    E Bandini, T Rossi, G Gallerani, F Fabbri
    Cancers 11 (10), 1451 2019
    Citations: 21

  • Circulating tumor cells in the adenocarcinoma of the esophagus
    G Gallerani, F Fabbri
    International Journal of Molecular Sciences 17 (8), 1266 2016
    Citations: 18

  • Stemness underpinning all steps of human colorectal cancer defines the core of effective therapeutic strategies
    A Visioli, F Giani, N Trivieri, R Pracella, E Miccinilli, MG Cariglia, ...
    EBioMedicine 44, 346-360 2019
    Citations: 14

  • Characterization of tumor cells using a medical wire for capturing circulating tumor cells: a 3D approach based on immunofluorescence and DNA FISH
    G Gallerani, C Cocchi, M Bocchini, F Piccinini, F Fabbri
    JoVE (Journal of Visualized Experiments), e56936 2017
    Citations: 10

  • Circulating tumor cells as a tool to untangle the breast cancer heterogeneity issue
    T Rossi, G Gallerani, G Martinelli, R Maltoni, F Fabbri
    Biomedicines 9 (9), 1242 2021
    Citations: 8

  • Circulating tumor cells: back to the future
    G Gallerani, P Fici, F Fabbri
    Frontiers in Oncology 6, 275 2017
    Citations: 8

  • The GILUPI CellCollector as an in vivo tool for circulating tumor cell enumeration and molecular characterization in lung cancer patients.
    K Luecke, L Gasiorowski, S Herold, N Brychta, G Gallerani, T Krahn, ...
    Journal of Clinical Oncology 33 (15_suppl), e22035-e22035 2015
    Citations: 7

  • Epithelial mesenchymal transition: a double-edged sword. Clin Transl Med. 2015; 4: 14
    G Barriere, P Fici, G Gallerani, F Fabbri, M Rigaud
    PUBMED
    Citations: 7

  • ARID1A in cancer: Friend or foe?
    B Fontana, G Gallerani, I Salamon, I Pace, R Roncarati, M Ferracin
    Frontiers in Oncology 13, 1136248 2023
    Citations: 6

  • Crowdfunding for cancer research: the TRACe campaign as an example
    G Gallerani, P Fici, A Coatti, P Mariotti, F Passeri, L Battistelli
    The Lancet Oncology 20 (5), 622-624 2019
    Citations: 6

  • Dissecting molecular heterogeneity of circulating tumor cells (CTCs) from metastatic breast cancer patients through copy number aberration (CNA) and single nucleotide variant
    T Rossi, D Angeli, M Tebaldi, P Fici, E Rossi, A Rocca, M Palleschi, ...
    Cancers 14 (16), 3925 2022
    Citations: 5

  • Early detection and investigation of extracellular vesicles biomarkers in breast cancer
    E Bandini, T Rossi, E Scarpi, G Gallerani, I Vannini, S Salvi, I Azzali, ...
    Frontiers in Molecular Biosciences 8, 732900 2021
    Citations: 5

  • DNA ploidy and S-phase fraction analysis in peritoneal carcinomatosis from ovarian cancer: correlation with clinical pathological factors and response to chemotherapy
    S Carloni, G Gallerani, A Tesei, E Scarpi, GM Verdecchia, S Virz, F Fabbri, ...
    OncoTargets and therapy, 4657-4664 2017
    Citations: 5