Manish Bhattarai
@lanl.gov
Staff Scientist/ Theoretical division
Los alamos National laboratory
RESEARCH, TEACHING, or OTHER INTERESTS
Artificial Intelligence, Signal Processing, Computer Vision and Pattern Recognition, Computational Theory and Mathematics
546
Scholar Citations
11
Scholar h-index
14
Scholar i10-index
RECENT SCHOLAR PUBLICATIONS
- Topological Signatures of Adversaries in Multimodal Alignments
M Vu, G Zollicoffer, H Mai, B Nebgen, B Alexandrov, M Bhattarai
arXiv preprint arXiv:2501.18006 2025 - Contribution of DNA breathing to physical interactions with transcription factors
W Butt, B Lai, TP Chiu, M Bhattarai, S Qian, AR Bishop, J Duan, ...
bioRxiv, 2025.01. 20.633840 2025 - Domain-Specific Retrieval-Augmented Generation Using Vector Stores, Knowledge Graphs, and Tensor Factorization
RC Barron, V Grantcharov, S Wanna, ME Eren, M Bhattarai, N Solovyev, ...
2024 International Conference on Machine Learning and Applications (ICMLA 2024 - Efficient High-Throughput DNA Breathing Features Generation Using Jax-EPBD
TT Inan, A Kabir, K Rasmussen, A Shehu, A Usheva, A Bishop, ...
bioRxiv, 2024.12. 06.627191 2024 - Scalable DNA Feature Generation and Transcription Factor Binding Prediction via Deep Surrogate Models
A Kabir, TT Inan, K Rasmussen, A Shehu, A Usheva, A Bishop, ...
bioRxiv, 2024.12. 06.626709 2024 - Enhancing Cross-Language Code Translation via Task-Specific Embedding Alignment in Retrieval-Augmented Generation
M Bhattarai, M Vu, JE Santos, I Boureima, DO Malley
arXiv preprint arXiv:2412.05159 2024 - HEAL: Hierarchical Embedding Alignment Loss for Improved Retrieval and Representation Learning
M Bhattarai, R Barron, M Eren, M Vu, V Grantcharov, I Boureima, V Stanev, ...
arXiv preprint arXiv:2412.04661 2024 - Patchfinder: Leveraging Visual Language Models for Accurate Information Retrieval using Model Uncertainty
R Colman, M Vu, M Bhattarai, M Ma, H Viswanathan, D O'Malley, ...
arXiv preprint arXiv:2412.02886 2024 - Benchmarking Large Language Models with Integer Sequence Generation Tasks
D O'Malley, M Bhattarai, J Santos
arXiv preprint arXiv:2411.04372 2024 - DNA breathing integration with deep learning foundational model advances genome-wide binding prediction of human transcription factors
A Kabir, M Bhattarai, S Peterson, Y Najman-Licht, K Rasmussen, ...
Nucleic Acids Research 52 (19), e91-e91 2024 - LoRID: Low-Rank Iterative Diffusion for Adversarial Purification
G Zollicoffer, M Vu, B Nebgen, J Castorena, B Alexandrov, M Bhattarai
arXiv preprint arXiv:2409.08255 2024 - TopicTag: Automatic Annotation of NMF Topic Models Using Chain of Thought and Prompt Tuning with LLMs
S Wanna, N Solovyev, R Barron, ME Eren, M Bhattarai, K Rasmussen, ...
Proceedings of the ACM Symposium on Document Engineering 2024, 1-4 2024 - LaFA: Latent Feature Attacks on Non-negative Matrix Factorization
M Vu, B Nebgen, E Skau, G Zollicoffer, J Castorena, K Rasmussen, ...
arXiv preprint arXiv:2408.03909 2024 - Tensor Train Low-rank Approximation (TT-LoRA): Democratizing AI with Accelerated LLMs
A Anjum, ME Eren, I Boureima, B Alexandrov, M Bhattarai
arXiv preprint arXiv:2408.01008 2024 - Enhancing code translation in language models with few-shot learning via retrieval-augmented generation
M Bhattarai, JE Santos, S Jones, A Biswas, B Alexandrov, D O'Malley
arXiv preprint arXiv:2407.19619 2024 - Binary Bleed: Fast Distributed and Parallel Method for Automatic Model Selection
R Barron, ME Eren, M Bhattarai, I Boureima, C Matuszek, BS Alexandrov
arXiv preprint arXiv:2407.19125 2024 - Towards Faster Matrix Diagonalization with Graph Isomorphism Networks and the AlphaZero Framework
G Zollicoffer, K Bhatta, M Bhattarai, P Romero, CFA Negre, A Niklasson, ...
arXiv preprint arXiv:2407.00779 2024 - Accelerating Matrix Diagonalization through Decision Transformers with Epsilon-Greedy Optimization
K Bhatta, G Zollicoffer, M Bhattarai, P Romero, CFA Negre, A Niklasson, ...
arXiv preprint arXiv:2406.16191 2024 - EPBD-BERT
A Kabir, M Bhattarai, B Alexandrov, K Rasmussen, A Bishop
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States) 2024 - Cyber-Security Knowledge Graph Generation by Hierarchical Nonnegative Matrix Factorization
R Barron, ME Eren, M Bhattarai, S Wanna, N Solovyev, K Rasmussen, ...
2024 12th International Symposium on Digital Forensics and Security (ISDFS), 1-6 2024
MOST CITED SCHOLAR PUBLICATIONS
- Deep residual learning for neuroimaging: an application to predict progression to Alzheimer’s disease
A Abrol, M Bhattarai, A Fedorov, Y Du, S Plis, V Calhoun, ...
Journal of neuroscience methods 339, 108701 2020
Citations: 177 - A deep learning framework for detection of targets in thermal images to improve firefighting
M Bhattarai, M Martinez-Ramon
IEEE access 8, 88308-88321 2020
Citations: 43 - An embedded deep learning system for augmented reality in firefighting applications
M Bhattarai, AR Jensen-Curtis, M MartNez-Ramn
2020 19th IEEE International Conference on Machine Learning and Applications 2020
Citations: 43 - Finding the number of latent topics with semantic non-negative matrix factorization
R Vangara, M Bhattarai, E Skau, G Chennupati, H Djidjev, T Tierney, ...
IEEE access 9, 117217-117231 2021
Citations: 38 - One-shot federated group collaborative filtering
ME Eren, M Bhattarai, N Solovyev, LE Richards, R Yus, C Nicholas, ...
2022 21st IEEE International Conference on Machine Learning and Applications 2022
Citations: 22 - Semantic nonnegative matrix factorization with automatic model determination for topic modeling
R Vangara, E Skau, G Chennupati, H Djidjev, T Tierney, JP Smith, ...
2020 19th IEEE International Conference on Machine Learning and Applications 2020
Citations: 22 - Distributed non-negative tensor train decomposition
M Bhattarai, G Chennupati, E Skau, R Vangara, H Djidjev, BS Alexandrov
2020 IEEE High Performance Extreme Computing Conference (HPEC), 1-10 2020
Citations: 20 - Diagram image retrieval using sketch-based deep learning and transfer learning
M Bhattarai, D Oyen, J Castorena, L Yang, B Wohlberg
Proceedings of the IEEE/CVF conference on computer vision and pattern 2020
Citations: 16 - A Deep Q-learning based Path Planning and Navigation System for Firefighting Environments
M Bhattarai, M MartNez-Ramn
Proceedings of the 13th International Conference on Agents and Artificial 2021
Citations: 13 - General-purpose unsupervised cyber anomaly detection via non-negative tensor factorization
ME Eren, JS Moore, E Skau, E Moore, M Bhattarai, G Chennupati, ...
Digital Threats: Research and Practice 4 (1), 1-28 2023
Citations: 12 - Enhancing code translation in language models with few-shot learning via retrieval-augmented generation
M Bhattarai, JE Santos, S Jones, A Biswas, B Alexandrov, D O'Malley
arXiv preprint arXiv:2407.19619 2024
Citations: 11 - Distributed out-of-memory NMF on CPU/GPU architectures
I Boureima, M Bhattarai, M Eren, E Skau, P Romero, S Eidenbenz, ...
The Journal of Supercomputing 80 (3), 3970-3999 2024
Citations: 10 - Senmfk-split: Large corpora topic modeling by semantic non-negative matrix factorization with automatic model selection
ME Eren, N Solovyev, M Bhattarai, K Rasmussen, C Nicholas, ...
Proceedings of the 22nd ACM Symposium on Document Engineering, 1-4 2022
Citations: 10 - pyDNMFk: Python Distributed Non Negative Matrix Factorization with determination of hidden features
M Bhattarai, B Nebgen, E Skau, M Eren, G Chennupati, R Vangara, ...
https://github.com/lanl/pyDNMFk 2021
Citations: 10 - Semi-supervised classification of malware families under extreme class imbalance via hierarchical non-negative matrix factorization with automatic model selection
ME Eren, M Bhattarai, RJ Joyce, E Raff, C Nicholas, BS Alexandrov
ACM Transactions on Privacy and Security 26 (4), 1-27 2023
Citations: 8 - Distributed non-negative rescal with automatic model selection for exascale data
M Bhattarai, I Boureima, E Skau, B Nebgen, H Djidjev, S Rajopadhye, ...
Journal of Parallel and Distributed Computing 179, 104709 2023
Citations: 8 - Distributed out-of-memory svd on cpu/gpu architectures
I Boureima, M Bhattarai, ME Eren, N Solovyev, H Djidjev, BS Alexandrov
2022 IEEE High Performance Extreme Computing Conference (HPEC), 1-8 2022
Citations: 8 - Tensor Extraction of Latent Features (TELF)
M Eren, B Alexandrov, M Bhattarai, K Rasmussen, E Skau, D Truong, ...
Los Alamos National Laboratory (LANL), Los Alamos, NM (United States) 2024
Citations: 7 - Examining DNA breathing with pyDNA-EPBD
A Kabir, M Bhattarai, K Rasmussen, A Shehu, A Usheva, AR Bishop, ...
Bioinformatics 39 (11), btad699 2023
Citations: 7 - Domain-Specific Retrieval-Augmented Generation Using Vector Stores, Knowledge Graphs, and Tensor Factorization
RC Barron, V Grantcharov, S Wanna, ME Eren, M Bhattarai, N Solovyev, ...
2024 International Conference on Machine Learning and Applications (ICMLA 2024
Citations: 6