Somatic Embryogenesis in Conifers: One Clade to Rule Them All? Hugo Pacheco de Freitas Fraga, Paula Eduarda Cardoso Moraes, Leila do Nascimento Vieira, Miguel Pedro Guerra Plants, 2023 Somatic embryogenesis (SE) in conifers is usually characterized as a multi-step process starting with the development of proembryogenic cell masses and followed by histodifferentiation, somatic embryo development, maturation, desiccation, and plant regeneration. Our current understanding of conifers’ SE is mainly derived from studies using Pinaceae species as a model. However, the evolutionary relationships between conifers are not clear. Some hypotheses consider conifers as a paraphyletic group and Gnetales as a closely related clade. In this review, we used an integrated approach in order to cover the advances in knowledge on SE in conifers and Gnetales, discussing the state-of-the-art and shedding light on similarities and current bottlenecks. With this approach, we expect to be able to better understand the integration of these clades within current studies on SE. Finally, the points discussed raise an intriguing question: are non-Pinaceae conifers less prone to expressing embryogenic competence and generating somatic embryos as compared to Pinaceae species? The development of fundamental studies focused on this morphogenetic route in the coming years could be the key to finding a higher number of points in common between these species, allowing the success of the SE of one species to positively affect the success of another.
Somatic Embryogenesis in Bamboos: Advances and Prospects Luiza Giacomolli Polesi, Leila do Nascimento Vieira, Miguel Pedro Guerra, Hugo Pacheco de Freitas Fraga Biotechnological Advances in Bamboo the Green Gold on the Earth, 2021
In vitro establishment of Bambusa oldhamii Munro from fieldgrown matrices and molecular identification of endophytic bacteria Pesquisa Agropecuaria Tropical, 2019
In vitro culture and diversity of endophytic fungi in bambusa oldhamii Pesquisa Agropecuaria Tropical, 2019
Cryopreservation of Dyckia ibiramensis Reitz (Bromeliaceae) Seeds: An Endangered and Endemic Species from the Brazilian Atlantic Forest IT Grott, R Bittencourt, HP de Freitas Fraga, M Lambardi, MP Guerra South African Journal of Botany 192, 176-183 , 2026 2026
In vitro propagation and slow growth storage of the endangered Brazilian bromeliad Dyckia ibiramensis Reitz: Grott et al. IT Grott, HPF Fraga, MP Guerra, R Bittencourt In Vitro Cellular & Developmental Biology-Plant 62 (1), 147-155 , 2026 2026
Proteomic and morphoanatomical analyses reveal allelopathic effects of aqueous extract of Eugenia involucrata DC. (Myrtaceae) on Lactuca sativa L. (Asteraceae … B Oliveira Souza dos Reis, J Klostermann Ziemmer, ... Brazilian Journal of Botany 49 (1), 1 , 2025 2025
Natural ventilation enhances shoot proliferation and primes photosynthetic function in in vitro cultivated Maxillaria picta (Orchidaceae) FR da Silva, CA Stefanello, MP Gomes, HPF Fraga Plant Cell, Tissue and Organ Culture (PCTOC) 163 (2), 44 , 2025 2025
6-benzylaminopurine promotes the shoots formation during plantlets in vitro culture and affects the photosynthetic pigments accumulation in acclimatized plants of Maxillaria … F Raach da Silva, C Alves Stefanello, H Pacheco de Freitas Fraga Plant Cell, Tissue and Organ Culture (PCTOC) 160 (2), 58 , 2025 2025 Citations: 3
Plant regeneration capacity in seeds of three species of Miconia (Melastomataceae) may be related to endogenous polyamine profiles JK Ziemmer, T dos Reis de Oliveira, C Santa-Catarina, ... Protoplasma 261 (5), 937-950 , 2024 2024 Citations: 1
Proteomic and histological analysis of in vitro callogenesis in three species of Miconia (Melastomataceae) reveals higher accumulation of proteins related to somatic … JK Ziemmer, LN Vieira, E Amano, FA de Almeida, V Silveira, ... Elsevier 172, 80-92 , 2024 2024
Genome size and guard cell length are associated in four species of Miconia (Miconieae, Melastomataceae) JK Ziemmer, P Sperotto, LN Vieira, HPF Fraga, E Amano, M Reginato, ... Springer-Nature 47, 199-204 , 2024 2024 Citations: 5
Somatic embryogenesis in conifers: one clade to rule them all? HPF Fraga, PEC Moraes, LN Vieira, MP Guerra Plants 12 (14), 2648 , 2023 2023 Citations: 16
Callus induction in Araucaria angustifolia using orthotropic and plagiotropic apexes: proteomic and morphoanatomical aspects K Terhaag, JK Ziemmer, CA Stefanello, FA de Almeida, V Silveira, ... Plant Cell, Tissue and Organ Culture (PCTOC) 153 (3), 639-656 , 2023 2023 Citations: 3
Comparative proteomic analysis and antioxidant enzyme activity provide new insights into the embryogenic competence of Guadua chacoensis (Bambusoideae, Poaceae) LG Polesi, HP de Freitas Fraga, FA Almeida, V Silveira, MP Guerra Journal of Proteomics 273, 104790 , 2023 2023 Citations: 4
Enzymatic Antioxidant System Activation Assures the Viability of Guadua chacoensis (Bambusoideae, Poaceae) Embryogenic Cultures during Cryopreservation LG Polesi, D Goeten, HPF Fraga, N Steiner, MP Guerra Plants 12 (3), 673 , 2023 2023 Citations: 3
Morphohistological and biochemical features of the Guadua chacoensis (Bambusoideae; Poaceae) somatic embryogenesis L Giacomolli Polesi, H Pacheco de Freitas Fraga, D Goeten, ... Plant Cell, Tissue and Organ Culture (PCTOC) 148 (3), 479-499 , 2022 2022 Citations: 7
The complete plastid genome of Bactris riparia (Arecaceae) and a comparative analysis in Bactridinae (Cocoseae, Arecaceae) MC Dias, CR Clement, HPF Fraga, RS Silva, DP Rodrigues, LN Vieira Genetics and Molecular Biology 45, e20210305 , 2022 2022
Domesticação de plantas: um processo co-evolutivo L do Nascimento Vieira, HP de Freitas Fraga, GM Serbin, RS da Silva, ... Genética na Escola 16 (2), 356-367 , 2021 2021 Citations: 4
The cytokinin 6-Benzylaminopurine improves the formation and development of Dryadella zebrina (Orchidaceae) in vitro shoots J dos Santos Anjos, C Alves Stefanello, L do Nascimento Vieira, ... Brazilian Journal of Botany 44 (4), 811-819 , 2021 2021 Citations: 13
Somatic embryogenesis in bamboos: advances and prospects LG Polesi, L do Nascimento Vieira, MP Guerra, ... Biotechnological Advances in Bamboo: The “Green Gold” on the Earth, 85-105 , 2021 2021 Citations: 8
The plastome sequence of Bactris gasipaes and evolutionary analysis in tribe Cocoseae (Arecaceae) R Santos da Silva, C Roland Clement, E Balsanelli, VA de Baura, ... PLoS One 16 (8), e0256373 , 2021 2021 Citations: 11
Characterization of the complete plastid genome of Butia eriospatha (Arecaceae) JW de Souza Magnabosco, HP de Freitas Fraga, RS Da Silva, M Rogalski, ... Genetics and Molecular Biology 43 (4), e20200023 , 2020 2020 Citations: 10
Improved in vitro development of Epidendrum secundum (Orchidaceae) by using aqueous extract of the seaweed Kappaphycus alvarezii (Rhodophyta … JC de Araújo Amatuzzi, L do Nascimento Vieira, BF Sant’Anna-Santos, ... Acta Physiologiae Plantarum 42 (8), 136 , 2020 2020 Citations: 13
MOST CITED SCHOLAR PUBLICATIONS
Plastid genomics in horticultural species: importance and applications for plant population genetics, evolution, and biotechnology M Rogalski, L do Nascimento Vieira, HP Fraga, MP Guerra Frontiers in plant science 6, 586 , 2015 2015 Citations: 122
5-Azacytidine combined with 2,4-D improves somatic embryogenesis of Acca sellowiana (O. Berg) Burret by means of changes in global DNA methylation levels HPF Fraga, LN Vieira, CA Caprestano, DA Steinmacher, GA Micke, ... Plant Cell Reports 31 (12), 2165-2176 , 2012 2012 Citations: 115
An improved protocol for intact chloroplasts and cpDNA isolation in conifers LN Vieira, H Faoro, HPF Fraga, M Rogalski, EM de Souza, ... PLoS One 9 (1), e84792 , 2014 2014 Citations: 89
Efficient elimination of virus complex from garlic ( Allium sativum L.) by cryotherapy of shoot tips RL Vieira, AL da Silva, GR Zaffari, DA Steinmacher, HP de Freitas Fraga, ... Acta physiologiae plantarum 37 (1), 1733 , 2015 2015 Citations: 80
The Complete Chloroplast Genome Sequence of Podocarpus lambertii : Genome Structure, Evolutionary Aspects, Gene Content and SSR Detection LN Vieira, H Faoro, M Rogalski, HPF Fraga, RLA Cardoso, EM de Souza, ... PLoS One 9 (3), e90618 , 2014 2014 Citations: 72
Light-emitting diodes (LED) increase the stomata formation and chlorophyll content in Musa acuminata (AAA) ‘Nanicão Corupá’ in vitro plantlets L do Nascimento Vieira, HP de Freitas Fraga, KG dos Anjos, ... Theoretical and Experimental Plant Physiology 27 (2), 91-98 , 2015 2015 Citations: 71
DNA methylation and proteome profiles of Araucaria angustifolia (Bertol.) Kuntze embryogenic cultures as affected by plant growth regulators supplementation HPF Fraga, LN Vieira, AS Heringer, CC Puttkammer, V Silveira, ... Plant Cell, Tissue and Organ Culture (PCTOC) 125 (2), 353-374 , 2016 2016 Citations: 68
Nodule cluster cultures and temporary immersion bioreactors as a high performance micropropagation strategy in pineapple Ananas comosus var. comosus RF Scherer, AC Garcia, HPF Fraga, LLD Vesco, DA Steinmacher, ... Scientia Horticulturae 151, 38-45 , 2013 2013 Citations: 66
Glutathione improves early somatic embryogenesis in Araucaria angustifolia (Bert) O. Kuntze by alteration in nitric oxide emission L do Nascimento Vieira, C Santa-Catarina, HP de Freitas Fraga, ... Plant Science 195, 80-87 , 2012 2012 Citations: 59
Epigenetics of long-term somatic embryogenesis in Theobroma cacao L.: DNA methylation and recovery of embryogenic potential LA Pila Quinga, H Pacheco de Freitas Fraga, L do Nascimento Vieira, ... Plant Cell, Tissue and Organ Culture (PCTOC) 131 (2), 295-305 , 2017 2017 Citations: 54
Effect of thermal stress on tissue ultrastructure and metabolite profiles during initiation of radiata pine somatic embryogenesis A Castander-Olarieta, IA Montalbán, E De Medeiros Oliveira, ... Frontiers in Plant Science 9, 2004 , 2019 2019 Citations: 45
Phylogenetic inference and SSR characterization of tropical woody bamboos tribe Bambuseae (Poaceae: Bambusoideae) based on complete plastid genome sequences LN Vieira, KG Dos Anjos, H Faoro, HPF Fraga, TM Greco, FO Pedrosa, ... Current Genetics 62 (2), 443-453 , 2016 2016 Citations: 41
Global DNA methylation profiles of somatic embryos of peach palm ( Bactris gasipaes Kunth) are influenced by cryoprotectants and droplet-vitrification … AS Heringer, DA Steinmacher, HPF Fraga, LN Vieira, JF Ree, MP Guerra Plant Cell, Tissue and Organ Culture (PCTOC) 114 (3), 365-372 , 2013 2013 Citations: 40
Improved high-efficiency protocol for somatic embryogenesis in Peach Palm (Bactris gasipaes Kunth) using RITA® temporary immersion system AS Heringer, DA Steinmacher, HPF Fraga, LN Vieira, T Montagna, ... Scientia Horticulturae 179, 284-292 , 2014 2014 Citations: 38
Glutathione and abscisic acid supplementation influences somatic embryo maturation and hormone endogenous levels during somatic embryogenesis in Podocarpus lambertii Klotzsch … HP de Freitas Fraga, L do Nascimento Vieira, CC Puttkammer, ... Plant Science 253, 98-106 , 2016 2016 Citations: 35
The plastome sequence of the endemic Amazonian conifer, Retrophyllum piresii (Silba) C.N.Page, reveals different recombination events and plastome isoforms L do Nascimento Vieira, M Rogalski, H Faoro, ... Tree Genetics & Genomes 12 (1), 10 , 2016 2016 Citations: 29
Insights into the conversion potential of Theobroma cacao L. somatic embryos using quantitative proteomic analysis LAP Quinga, AS Heringer, HP de Freitas Fraga, L do Nascimento Vieira, ... Scientia horticulturae 229, 65-76 , 2018 2018 Citations: 22
High-efficiency cryopreservation of Araucaria angustifolia (Bertol.) Kuntze embryogenic cultures: ultrastructural characterization and morpho-physiological features HPF Fraga, LN Vieira, CC Puttkammer, JM da Silva, KG dos Anjos, ... Plant Cell, Tissue and Organ Culture (PCTOC) 124 (2), 307-318 , 2016 2016 Citations: 20
Global DNA methylation levels during the development of nodule cluster cultures and assessment of genetic fidelity of in vitro-regenerated pineapple plants (Ananas comosus var … RF Scherer, HP de Freitas Fraga, GF Klabunde, DA Da Silva, MP Guerra Journal of Plant Growth Regulation 34 (3), 677-683 , 2015 2015 Citations: 20
Embryonal masses induced at high temperatures in Aleppo pine: Cytokinin profile and cytological characterization C Pereira, A Castander-Olarieta, IA Montalbán, A Pěnčík, I Petřík, ... Forests 11 (8), 807 , 2020 2020 Citations: 18