Takumi Nishiuchi

@kanazawa-u.ac.jp

Research Center for Experimental Modeling of Human Disease
Kanazawa Unniversity



                 

https://researchid.co/tnish913

RESEARCH, TEACHING, or OTHER INTERESTS

Plant Science, Biochemistry, Genetics and Molecular Biology, Agronomy and Crop Science, Archeology

133

Scopus Publications

4708

Scholar Citations

38

Scholar h-index

88

Scholar i10-index

Scopus Publications

  • Super-enhancer trapping by the nuclear pore via intrinsically disordered regions of proteins in squamous cell carcinoma cells
    Masaharu Hazawa, Dini Kurnia Ikliptikawati, Yuki Iwashima, De-Chen Lin, Yuan Jiang, Yujia Qiu, Kei Makiyama, Koki Matsumoto, Akiko Kobayashi, Goro Nishide,et al.

    Elsevier BV

  • Wet-type grinder-treated okara modulates gut microbiota composition and attenuates obesity in high-fat-fed mice
    Takao Nagano, Chihiro Watanabe, Eri Oyanagi, Hiromi Yano, and Takumi Nishiuchi

    Elsevier BV

  • Identification of uromodulin deposition in the stroma of perinephric fibromyxoid nephrogenic adenoma by mass spectrometry
    Kaori Yoshimura, Yukinobu Ito, Mina Suzuki, Masafumi Horie, Takumi Nishiuchi, Yukako Shintani‐Domoto, Kazuyoshi Shigehara, Hiroko Oshima, Masanobu Oshima, Akiteru Goto,et al.

    Wiley
    AbstractNephrogenic adenoma (NA) is an epithelial lesion that usually occurs in the mucosa of the urinary tract. Rare cases of deep infiltrative or perinephric lesions have also been reported. Recently, NA with characteristic fibromyxoid stroma (fibromyxoid NA) has been proposed as a distinct variant. Although shedding of distal renal tubular cells due to urinary tract rupture has been postulated as the cause of NA in general, the mechanism underlying extraurinary presentation of NA and fibromyxoid stromal change in fibromyxoid NA remains unknown. In this study, we performed mass spectrometry (MS) analysis in a case of perinephric fibromyxoid NA of an 82‐year‐old man who underwent right nephroureterectomy for distal ureteral cancer. The patient had no prior history of urinary tract injury or radiation. Periodic acid‐Schiff staining‐positive eosinophilic structureless deposits in the stroma of fibromyxoid NA were microdissected and subjected to liquid chromatography/MS. The analysis revealed the presence of a substantial amount of uromodulin (Tamm−Horsfall protein). The presence of urinary content in the stroma of perinephric fibromyxoid NA suggests that urinary tract rupture and engraftment of renal tubular epithelial cells directly cause the lesion.

  • The disordered C-terminal tail of fungal LPMOs from phytopathogens mediates protein dimerization and impacts plant penetration
    Ketty C. Tamburrini, Sayo Kodama, Sacha Grisel, Mireille Haon, Takumi Nishiuchi, Bastien Bissaro, Yasuyuki Kubo, Sonia Longhi, and Jean-Guy Berrin

    Proceedings of the National Academy of Sciences
    Lytic polysaccharide monooxygenases (LPMOs) are monocopper enzymes that oxidatively degrade various polysaccharides, such as cellulose. Despite extensive research on this class of enzymes, the role played by their C-terminal regions predicted to be intrinsically disordered (dCTR) has been overlooked. Here, we investigated the function of the dCTR of an LPMO, called Co AA9A, up-regulated during plant infection by Colletotrichum orbiculare , the causative agent of anthracnose. After recombinant production of the full-length protein, we found that the dCTR mediates Co AA9A dimerization in vitro, via a disulfide bridge, a hitherto-never-reported property that positively affects both binding and activity on cellulose. Using SAXS experiments, we show that the homodimer is in an extended conformation. In vivo, we demonstrate that gene deletion impairs formation of the infection-specialized cell called appressorium and delays penetration of the plant. Using immunochemistry, we show that the protein is a dimer not only in vitro but also in vivo when secreted by the appressorium. As these peculiar LPMOs are also found in other plant pathogens, our findings open up broad avenues for crop protection.



  • Renal Pharmacokinetic Adaptation to Cholestasis Causes Increased Nephrotoxic Drug Accumulation by Mrp6 Downregulation in Mice
    Hiroshi Arakawa, Takumi Kawanishi, Dai Shengyu, Takumi Nishiuchi, Makiko Meguro-Horike, Shin-ichi Horike, Masahiro Sugimoto, and Yukio Kato

    Elsevier BV

  • Kynurenine promotes Calcitonin secretion and reduces cortisol in the Japanese flounder Paralichthys olivaceus
    Takahiro Ikari, Yukihiro Furusawa, Yoshiaki Tabuchi, Yusuke Maruyama, Atsuhiko Hattori, Yoichiro Kitani, Kenji Toyota, Arata Nagami, Jun Hirayama, Kazuki Watanabe,et al.

    Springer Science and Business Media LLC
    AbstractDeep ocean water (DOW) exerts positive effects on the growth of marine organisms, suggesting the presence of unknown component(s) that facilitate their aquaculture. We observed that DOW suppressed plasma cortisol (i.e., a stress marker) concentration in Japanese flounder (Paralichthys olivaceus) reared under high-density condition. RNA-sequencing analysis of flounder brains showed that when compared to surface seawater (SSW)-reared fish, DOW-reared fish had lower expression of hypothalamic (i.e., corticotropin-releasing hormone) and pituitary (i.e., proopiomelanocortin, including adrenocorticotropic hormone) hormone-encoding genes. Moreover, DOW-mediated regulation of gene expression was linked to decreased blood cortisol concentration in DOW-reared fish. Our results indicate that DOW activated osteoblasts in fish scales and facilitated the production of Calcitonin, a hypocalcemic hormone that acts as an analgesic. We then provide evidence that the Calcitonin produced is involved in the regulatory network of genes controlling cortisol secretion. In addition, the indole component kynurenine was identified as the component responsible for osteoblast activation in DOW. Furthermore, kynurenine increased plasma Calcitonin concentrations in flounders reared under high-density condition, while it decreased plasma cortisol concentration. Taken together, we propose that kynurenine in DOW exerts a cortisol-reducing effect in flounders by facilitating Calcitonin production by osteoblasts in the scales.

  • Potential biomarker proteins for aspiration pneumonia detected by shotgun proteomics using buccal mucosa samples: a cross-sectional case–control study
    Kohei Ogura, Maho Endo, Takashi Hase, Hitomi Negami, Kohsuke Tsuchiya, Takumi Nishiuchi, Takeshi Suzuki, Kazuhiro Ogai, Hiromi Sanada, Shigefumi Okamoto,et al.

    Springer Science and Business Media LLC
    Abstract Background Aspiration pneumonia (AP), which is a major cause of death in the elderly, does present with typical symptoms in the early stages of onset, thus it is difficult to detect and treat at an early stage. In this study, we identified biomarkers that are useful for the detection of AP and focused on salivary proteins, which may be collected non-invasively. Because expectorating saliva is often difficult for elderly people, we collected salivary proteins from the buccal mucosa. Methods We collected samples from the buccal mucosa of six patients with AP and six control patients (no AP) in an acute-care hospital. Following protein precipitation using trichloroacetic acid and washing with acetone, the samples were analyzed by liquid chromatography and tandem mass spectrometry (LC–MS/MS). We also determined the levels of cytokines and chemokines in non-precipitated samples from buccal mucosa. Results Comparative quantitative analysis of LC–MS/MS spectra revealed 55 highly (P values < 0.10) abundant proteins with high FDR confidence (q values < 0.01) and high coverage (> 50%) in the AP group compared with the control group. Among the 55 proteins, the protein abundances of four proteins (protein S100-A7A, eukaryotic translation initiation factor 1, Serpin B4, and peptidoglycan recognition protein 1) in the AP group showed a negative correlation with the time post-onset; these proteins are promising AP biomarker candidates. In addition, the abundance of C-reactive protein (CRP) in oral samples was highly correlated with serum CRP levels, suggesting that oral CRP levels may be used as a surrogate to predict serum CRP in AP patients. A multiplex cytokine/chemokine assay revealed that MCP-1 tended to be low, indicating unresponsiveness of MCP-1 and its downstream immune pathways in AP. Conclusion Our findings suggest that oral salivary proteins, which are obtained non-invasively, can be utilized for the detection of AP.

  • Apple-derived extracellular vesicles modulate the expression of human intestinal bile acid transporter ASBT/SLC10A2 via downregulation of transcription factor RARα
    Shinya Usui, Qiunan Zhu, Hisakazu Komori, Yui Iwamoto, Takumi Nishiuchi, Yoshiyuki Shirasaka, and Ikumi Tamai

    Elsevier BV

  • Postnatal expression of CD38 in astrocytes regulates synapse formation and adult social memory
    Tsuyoshi Hattori, Stanislav M Cherepanov, Ryo Sakaga, Jureepon Roboon, Dinh Thi Nguyen, Hiroshi Ishii, Mika Takarada‐Iemata, Takumi Nishiuchi, Takayuki Kannon, Kazuyoshi Hosomichi,et al.

    EMBO
    AbstractSocial behavior is essential for health, survival, and reproduction of animals; however, the role of astrocytes in social behavior remains largely unknown. The transmembrane protein CD38, which acts both as a receptor and ADP‐ribosyl cyclase to produce cyclic ADP–ribose (cADPR) regulates social behaviors by promoting oxytocin release from hypothalamic neurons. CD38 is also abundantly expressed in astrocytes in the postnatal brain and is important for astroglial development. Here, we demonstrate that the astroglial‐expressed CD38 plays an important role in social behavior during development. Selective deletion of CD38 in postnatal astrocytes, but not in adult astrocytes, impairs social memory without any other behavioral abnormalities. Morphological analysis shows that depletion of astroglial CD38 in the postnatal brain interferes with synapse formation in the medial prefrontal cortex (mPFC) and hippocampus. Moreover, astroglial CD38 expression promotes synaptogenesis of excitatory neurons by increasing the level of extracellular SPARCL1 (also known as Hevin), a synaptogenic protein. The release of SPARCL1 from astrocytes is regulated by CD38/cADPR/calcium signaling. These data demonstrate a novel developmental role of astrocytes in neural circuit formation and regulation of social behavior in adults.

  • Membrane Proteomics to Understand Enhancement Effects of Millimeter-Wave Irradiation on Wheat Root under Flooding Stress
    Setsuko Komatsu, Kazuna Hamada, Takashi Furuya, Takumi Nishiuchi, and Masahiko Tani

    MDPI AG
    Millimeter-wave irradiation of wheat seeds enhances the growth of roots under flooding stress, but its mechanism is not clearly understood. To understand the role of millimeter-wave irradiation on root-growth enhancement, membrane proteomics was performed. Membrane fractions purified from wheat roots were evaluated for purity. H+-ATPase and calnexin, which are protein markers for membrane-purification efficiency, were enriched in a membrane fraction. A principal-component analysis of the proteomic results indicated that the millimeter-wave irradiation of seeds affects membrane proteins in grown roots. Proteins identified using proteomic analysis were confirmed using immunoblot or polymerase chain reaction analyses. The abundance of cellulose synthetase, which is a plasma-membrane protein, decreased under flooding stress; however, it increased with millimeter-wave irradiation. On the other hand, the abundance of calnexin and V-ATPase, which are proteins in the endoplasmic reticulum and vacuolar, increased under flooding stress; however, it decreased with millimeter-wave irradiation. Furthermore, NADH dehydrogenase, which is found in mitochondria membranes, was upregulated due to flooding stress but downregulated following millimeter-wave irradiation even under flooding stress. The ATP content showed a similar trend toward change in NADH dehydrogenase expression. These results suggest that millimeter-wave irradiation improves the root growth of wheat via the transitions of proteins in the plasma membrane, endoplasmic reticulum, vacuolar, and mitochondria.

  • Cell assembly analysis of neural circuits for innate behavior in Drosophila melanogaster using an immediate early gene stripe/egr-1
    Seika Takayanagi-Kiya, Natsumi Shioya, Takumi Nishiuchi, Masafumi Iwami, and Taketoshi Kiya

    Proceedings of the National Academy of Sciences
    Innate behavior, such as courtship behavior, is controlled by a genetically defined set of neurons. To date, it remains challenging to visualize and artificially control the neural population that is active during innate behavior in a whole-brain scale. Immediate early genes (IEGs), whose expression is induced by neural activity, can serve as powerful tools to map neural activity in the animal brain. We screened for IEGs in vinegar fly Drosophila melanogaster and identified stripe/egr-1 as a potent neural activity marker. Focusing on male courtship as a model of innate behavior, we demonstrate that stripe - GAL4- mediated reporter expression can label fruitless ( fru )-expressing neurons involved in courtship in an activity (experience)-dependent manner. Optogenetic reactivation of the labeled neurons elicited sexual behavior in males, whereas silencing of the labeled neurons suppressed courtship and copulation. Further, by combining stripe-GAL4- mediated reporter expression and detection of endogenous Stripe expression, we established methods that can label neurons activated under different contexts in separate time windows in the same animal. The cell assembly analysis of fru neural population in males revealed that distinct groups of neurons are activated during interactions with a female or another male. These methods will contribute to building a deeper understanding of neural circuit mechanisms underlying innate insect behavior.

  • Tandem metalloenzymes gate plant cell entry by pathogenic fungi
    Bastien Bissaro, Sayo Kodama, Takumi Nishiuchi, Anna Maria Díaz-Rovira, Hayat Hage, David Ribeaucourt, Mireille Haon, Sacha Grisel, A. Jalila Simaan, Fred Beisson,et al.

    American Association for the Advancement of Science (AAAS)
    Global food security is endangered by fungal phytopathogens causing devastating crop production losses. Many of these pathogens use specialized appressoria cells to puncture plant cuticles. Here, we unveil a pair of alcohol oxidase–peroxidase enzymes to be essential for pathogenicity. Using Colletotrichum orbiculare , we show that the enzyme pair is cosecreted by the fungus early during plant penetration and that single and double mutants have impaired penetration ability. Molecular modeling, biochemical, and biophysical approaches revealed a fine-tuned interplay between these metalloenzymes, which oxidize plant cuticular long-chain alcohols into aldehydes. We show that the enzyme pair is involved in transcriptional regulation of genes necessary for host penetration. The identification of these infection-specific metalloenzymes opens new avenues on the role of wax-derived compounds and the design of oxidase-specific inhibitors for crop protection.


  • Proteomic Profiling of Plant and Pathogen Interaction on the Leaf Epidermis
    Yasir Sidiq, Daisuke Tamaoki, and Takumi Nishiuchi

    MDPI AG
    The plant epidermis is the first line of plant defense against pathogen invasion, and likely contains important regulatory proteins related to the plant–pathogen interaction. This study aims to identify the candidates of these regulatory proteins expressed in the plant epidermis. We performed comparative proteomic studies to identify rapidly and locally expressed proteins in the leaf epidermis inoculated with fungal phytopathogen. The conidia solutions were dropped onto the Arabidopsis leaf surface, and then, we collected the epidermal tissues from inoculated and mock-treated leaves at 4 and 24 hpi. The label-free quantification methods showed that expressions of Arabidopsis proteins, which are related to defense signals, such as BAK1, MKK5, receptor-like protein kinases, transcription factors, and stomatal functions, were rapidly induced in the epidermal tissues of inoculated leaves. In contrast, most of them were not differentially regulated by fugal inoculation in the whole leaves. These findings clearly indicate that epidermal proteomics can monitor locally expressed proteins in inoculated areas of plant tissues. We also identified the 61 fungal proteins, including effector-like proteins specifically expressed on the Arabidopsis epidermis. Our new findings suggested that epidermal proteomics is useful for understanding the local expressions of plant and fungal proteins related to their interactions.

  • Estrogen induces the expression of EBV lytic protein ZEBRA, a marker of poor prognosis in nasopharyngeal carcinoma
    Hirotomo Dochi, Satoru Kondo, Takayuki Murata, Masaki Fukuyo, Asuka Nanbo, Kousho Wakae, Wen‐Ping Jiang, Toshihide Hamabe‐Horiike, Mariko Tanaka, Takumi Nishiuchi,et al.

    Wiley
    AbstractSeveral epidemiological studies have suggested that Epstein–Barr virus (EBV) lytic infection is essential for the development of nasopharyngeal carcinoma (NPC), as the elevation of antibody titers against EBV lytic proteins is a common feature of NPC. Although ZEBRA protein is a key trigger for the initiation of lytic infection, whether its expression affects the prognosis and pathogenesis of NPC remains unclear. In this study, 64 NPC biopsy specimens were analyzed using immunohistochemistry. We found that ZEBRA was significantly associated with a worsening of progression‐free survival in NPC (adjusted hazard ratio, 3.58; 95% confidence interval, 1.08–11.87; p = 0.037). Moreover, ZEBRA expression positively correlated with key endocrinological proteins, estrogen receptor α, and aromatase. The transcriptional level of ZEBRA is activated by estrogen in an estrogen receptor α‐dependent manner, resulting in an increase in structural gene expression levels and extracellular virus DNA copy number in NPC cell lines, reminiscent of lytic infection. Interestingly, it did not suppress cellular proliferation or increase apoptosis, in contrast with cells treated with 12‐O‐tetradecanoylphorbol‐13‐acetate and sodium butyrate, indicating that viral production induced by estrogen is not a cell lytic phenomenon. Our results suggest that intratumoral estrogen overproduced by aromatase could induce ZEBRA expression and EBV reactivation, contributing to the progression of NPC.

  • Dehalococcoides mccartyi NIT01, a novel isolate, dechlorinates high concentrations of chloroethenes by expressing at least six different reductive dehalogenases
    Masaki Asai, Naoko Yoshida, Toshiya Kusakabe, Mohamed Ismaeil, Takumi Nishiuchi, and Arata Katayama

    Elsevier BV

  • Subcellular proteomics to understand promotive effect of plant-derived smoke solution on soybean root
    Yusuke Murashita, Takumi Nishiuchi, Shafiq Ur Rehman, and Setsuko Komatsu

    MDPI AG
    Plant-derived smoke solution enhances soybean root growth; however, its mechanism is not clearly understood. Subcellular proteomics techniques were used for underlying roles of plant-derived smoke solution on soybean root growth. The fractions of membrane and nucleus were purified and evaluated for purity. ATPase and histone were enriched in the fractions of membrane and nucleus, respectively. Principal component analysis of proteomic results indicated that the plant-derived smoke solution affected the proteins in the membrane and nucleus. The proteins in the membrane and nucleus mainly increased and decreased, respectively, by the treatment of plant-derived smoke solution compared with control. In the proteins in the plasma membrane, ATPase increased, which was confirmed by immunoblot analysis, and ATP contents increased through the treatment of plant-derived smoke solution. Additionally, although the nuclear proteins mainly decreased, the expression of RNA polymerase II was up-regulated through the treatment of plant-derived smoke solution. These results indicate that plant-derived smoke solution enhanced soybean root growth through the transcriptional promotion with RNA polymerase II expression and the energy production with ATPase accumulation.

  • Coculture with hiPS-derived intestinal cells enhanced human hepatocyte functions in a pneumatic-pressure-driven two-organ microphysiological system
    Marie Shinohara, Hiroshi Arakawa, Yuuichi Oda, Nobuaki Shiraki, Shinji Sugiura, Takumi Nishiuchi, Taku Satoh, Keita Iino, Sylvia Leo, Yusuke Kato,et al.

    Springer Science and Business Media LLC
    AbstractExamining intestine–liver interactions is important for achieving the desired physiological drug absorption and metabolism response in in vitro drug tests. Multi-organ microphysiological systems (MPSs) constitute promising tools for evaluating inter-organ interactions in vitro. For coculture on MPSs, normal cells are challenging to use because they require complex maintenance and careful handling. Herein, we demonstrated the potential of coculturing normal cells on MPSs in the evaluation of intestine–liver interactions. To this end, we cocultured human-induced pluripotent stem cell-derived intestinal cells and fresh human hepatocytes which were isolated from PXB mice with medium circulation in a pneumatic-pressure-driven MPS with pipette-friendly liquid-handling options. The cytochrome activity, albumin production, and liver-specific gene expressions in human hepatocytes freshly isolated from a PXB mouse were significantly upregulated via coculture with hiPS-intestinal cells. Our normal cell coculture shows the effects of the interactions between the intestine and liver that may occur in vivo. This study is the first to demonstrate the coculturing of hiPS-intestinal cells and fresh human hepatocytes on an MPS for examining pure inter-organ interactions. Normal-cell coculture using the multi-organ MPS could be pursued to explore unknown physiological mechanisms of inter-organ interactions in vitro and investigate the physiological response of new drugs.

  • Tryptophan-derived metabolites and BAK1 separately contribute to Arabidopsis postinvasive immunity against Alternaria brassicicola
    Ayumi Kosaka, Marta Pastorczyk, Mariola Piślewska-Bednarek, Takumi Nishiuchi, Erika Ono, Haruka Suemoto, Atsushi Ishikawa, Henning Frerigmann, Masanori Kaido, Kazuyuki Mise,et al.

    Springer Science and Business Media LLC
    AbstractNonhost resistance of Arabidopsis thaliana against the hemibiotrophic fungus Colletotrichum tropicale requires PEN2-dependent preinvasive resistance and CYP71A12 and CYP71A13-dependent postinvasive resistance, which both rely on tryptophan (Trp) metabolism. We here revealed that CYP71A12, CYP71A13 and PAD3 are critical for Arabidopsis’ postinvasive basal resistance toward the necrotrophic Alternaria brassicicola. Consistent with this, gene expression and metabolite analyses suggested that the invasion by A. brassicicola triggered the CYP71A12-dependent production of indole-3-carboxylic acid derivatives and the PAD3 and CYP71A13-dependent production of camalexin. We next addressed the activation of the CYP71A12 and PAD3-dependent postinvasive resistance. We found that bak1-5 mutation significantly reduced postinvasive resistance against A. brassicicola, indicating that pattern recognition contributes to activation of this second defense-layer. However, the bak1-5 mutation had no detectable effects on the Trp-metabolism triggered by the fungal penetration. Together with this, further comparative gene expression analyses suggested that pathogen invasion in Arabidopsis activates (1) CYP71A12 and PAD3-related antifungal metabolism that is not hampered by bak1-5, and (2) a bak1-5 sensitive immune pathway that activates the expression of antimicrobial proteins.

  • Arabidopsis CURLY LEAF functions in leaf immunity against fungal pathogens by concomitantly repressing SEPALLATA3 and activating ORA59
    Suthitar Singkaravanit‐Ogawa, Ayumi Kosaka, Saeko Kitakura, Kotaro Uchida, Takumi Nishiuchi, Erika Ono, Satoshi Fukunaga, and Yoshitaka Takano

    Wiley
    SUMMARYArabidopsis non‐host resistance against non‐adapted fungal pathogens including Colletotrichum fungi consists of pre‐invasive and post‐invasive immune responses. Here we report that non‐host resistance against non‐adapted Colletotrichum spp. in Arabidopsis leaves requires CURLY LEAF (CLF), which is critical for leaf development, flowering and growth. Microscopic analysis of pathogen behavior revealed a requirement for CLF in both pre‐ and post‐invasive non‐host resistance. The loss of a functional SEPALLATA3 (SEP3) gene, ectopically expressed in clf mutant leaves, suppressed not only the defect of the clf plants in growth and leaf development but also a defect in non‐host resistance against the non‐adapted Colletotrichum tropicale. However, the ectopic overexpression of SEP3 in Arabidopsis wild‐type leaves did not disrupt the non‐host resistance. The expression of multiple plant defensin (PDF) genes that are involved in non‐host resistance against C. tropicale was repressed in clf leaves. Moreover, the Octadecanoid‐responsive Arabidopsis 59 (ORA59) gene, which is required for PDF expression, was also repressed in clf leaves. Notably, when SEP3 was overexpressed in the ora59 mutant background, C. tropicale produced clear lesions in the inoculated leaves, indicating an impairment in non‐host resistance. Furthermore, ora59 plants overexpressing SEP3 exhibited a defect in leaf immunity to the adapted Colletotrichum higginsianum. Since the ora59 plants overexpressing SEP3 did not display obvious leaf curling or reduced growth, in contrast to the clf mutants, these results strongly suggest that concomitant SEP3 repression and ORA59 induction via CLF are required for Arabidopsis leaf immunity to Colletotrichum fungi, uncoupled from CLF’s function in growth and leaf development.

  • Nicotinamide effectively suppresses fusarium head blight in wheat plants
    Yasir Sidiq, Masataka Nakano, Yumi Mori, Takashi Yaeno, Makoto Kimura, and Takumi Nishiuchi

    MDPI AG
    Pyridine nucleotides such as a nicotinamide adenine dinucleotide (NAD) are known as plant defense activators. We previously reported that nicotinamide mononucleotide (NMN) enhanced disease resistance against fungal pathogen Fusarium graminearum in barley and Arabidopsis. In this study, we reveal that the pretreatment of nicotinamide (NIM), which does not contain nucleotides, effectively suppresses disease development of Fusarium Head Blight (FHB) in wheat plants. Correspondingly, deoxynivalenol (DON) mycotoxin accumulation was also significantly decreased by NIM pretreatment. A metabolome analysis showed that several antioxidant and antifungal compounds such as trigonelline were significantly accumulated in the NIM-pretreated spikes after inoculation of F. graminearum. In addition, some metabolites involved in the DNA hypomethylation were accumulated in the NIM-pretreated spikes. On the other hand, fungal metabolites DON and ergosterol peroxide were significantly reduced by the NIM pretreatment. Since NIM is relative stable and inexpensive compared with NMN and NAD, it may be more useful for the control of symptoms of FHB and DON accumulation in wheat and other crops.

  • Nicotinamide mononucleotide potentiates resistance to biotrophic invasion of fungal pathogens in barley
    Kana Ueda, Yuichi Nakajima, Hiroshi Inoue, Kappei Kobayashi, Takumi Nishiuchi, Makoto Kimura, and Takashi Yaeno

    MDPI AG
    Nicotinamide mononucleotide (NMN), a precursor of nicotinamide adenine dinucleotide (NAD), induces disease resistance to the Fusarium head blight fungus Fusarium graminearum in Arabidopsis and barley, but it is unknown at which stage of the infection it acts. Since the rate of haustorial formation of an obligate biotrophic barley powdery mildew fungus Blumeria graminis f. sp. hordei (Bgh) was significantly reduced in NMN-treated coleoptile epidermal cells, the possibility that NMN induces resistance to the biotrophic stage of F. graminearum was investigated. The results show that NMN treatment caused the wandering of hyphal growth and suppressed the formation of appressoria-like structures. Furthermore, we developed an experimental system to monitor the early stage of infection in real-time and analyzed the infection behavior. We observed that the hyphae elongated windingly by NMN treatment. These results suggest that NMN potentiates resistance to the biotrophic invasion of F. graminearum as well as Bgh.

  • Induction of tocopherol biosynthesis through heat shock treatment in Arabidopsis
    Miyuki Kusajima, Moeka Fujita, Takumi Nishiuchi, Hideo Nakashita, and Tadao Asami

    Informa UK Limited
    ABSTRACT Plants have developed various self-defense systems to survive many types of unfavorable conditions. Heat shock (HS) treatment, an abiotic stress, activates salicylic acid (SA) biosynthesis to enhance resistance to biotic stresses in some plant species. Since SA is produced from the shikimate pathway, other related metabolic pathways were expected to be upregulated by HS treatment. We speculated that tocopherol biosynthesis utilizing chorismic acid would be activated by HS treatment. In Arabidopsis, expression analysis of tocopherol biosynthetic genes, HPPD, VTE2, VTE3, VTE1, and VTE4, in combination with measurement of metabolites, indicated that HS treatment enhanced the biosynthesis and accumulation of tocopherols. Analyses using an SA biosynthesis-deficient mutant indicated that the upregulation of tocopherol biosynthesis was independent of the SA-mediated signaling pathway.

RECENT SCHOLAR PUBLICATIONS

  • Identification of uromodulin deposition in the stroma of perinephric fibromyxoid nephrogenic adenoma by mass spectrometry
    K Yoshimura, Y Ito, M Suzuki, M Horie, T Nishiuchi, Y Shintani‐Domoto, ...
    Pathology International 74 (4), 187-196 2024

  • The disordered C-terminal tail of fungal LPMOs from phytopathogens mediates protein dimerization and impacts plant penetration
    KC Tamburrini, S Kodama, S Grisel, M Haon, T Nishiuchi, B Bissaro, ...
    Proceedings of the National Academy of Sciences 121 (13), e2319998121 2024

  • Proteomic and molecular analyses to understand the promotive effect of safranal on soybean growth under salt stress
    R Kausar, T Nishiuchi, S Komatsu
    Journal of Proteomics 294, 105072 2024

  • Millmeter-wave irradiation regulates mRNA-expression and the ubiquitin-proteasome system in wheat exposed to flooding stress
    S Komatsu, T Nishiuchi, T Furuya, M Tani
    Journal of Proteomics 294, 105073 2024

  • Palaeoproteomic investigation of an ancient human skeleton with abnormal deposition of dental calculus
    Y Uchida-Fukuhara, S Shimamura, R Sawafuji, T Nishiuchi, M Yoneda, ...
    Scientific reports 14 (1), 5938 2024

  • Renal Pharmacokinetic Adaptation to Cholestasis Causes Increased Nephrotoxic Drug Accumulation by Mrp6 Downregulation in Mice
    H Arakawa, T Kawanishi, D Shengyu, T Nishiuchi, M Meguro-Horike, ...
    Journal of Pharmaceutical Sciences 112 (12), 3209-3215 2023

  • An agroecological structure model of compost—soil—plant interactions for sustainable organic farming
    H Miyamoto, K Shigeta, W Suda, Y Ichihashi, N Nihei, M Matsuura, ...
    ISME communications 3 (1), 28 2023

  • Potential biomarker proteins for aspiration pneumonia detected by shotgun proteomics using buccal mucosa samples: a cross-sectional case–control study
    K Ogura, M Endo, T Hase, H Negami, K Tsuchiya, T Nishiuchi, T Suzuki, ...
    Clinical Proteomics 20 (1), 9 2023

  • Apple-derived extracellular vesicles modulate the expression of human intestinal bile acid transporter ASBT/SLC10A2 via downregulation of transcription factor RARα
    S Usui, Q Zhu, H Komori, Y Iwamoto, T Nishiuchi, Y Shirasaka, I Tamai
    Drug Metabolism and Pharmacokinetics 52, 100512 2023

  • Cell assembly analysis of neural circuits for innate behavior in Drosophila melanogaster using an immediate early gene stripe/egr-1
    S Takayanagi-Kiya, N Shioya, T Nishiuchi, M Iwami, T Kiya
    Proceedings of the National Academy of Sciences 120 (33), e2303318120 2023

  • Postnatal expression of CD38 in astrocytes regulates synapse formation and adult social memory
    T Hattori, SM Cherepanov, R Sakaga, J Roboon, DT Nguyen, H Ishii, ...
    The EMBO Journal 42 (15), e111247 2023

  • Kynurenine promotes Calcitonin secretion and reduces cortisol in the Japanese flounder Paralichthys olivaceus
    T Ikari, Y Furusawa, Y Tabuchi, Y Maruyama, A Hattori, Y Kitani, K Toyota, ...
    Scientific Reports 13 (1), 8700 2023

  • Membrane proteomics to understand enhancement effects of millimeter-wave irradiation on wheat root under flooding stress
    S Komatsu, K Hamada, T Furuya, T Nishiuchi, M Tani
    International Journal of Molecular Sciences 24 (10), 9014 2023

  • Omics profiles of non-GM tubers from transgrafted potato with a GM scion
    T Miyahara, T Nishiuchi, N Fujikawa, T Oguchi, A Kikuchi, K Taoka, ...
    Food Safety 11 (1), D-22-00010 2023

  • Multi-omics Analyses of Non-GM Tomato Scion Engrafted on GM Rootstocks
    T Ogawa, K Kato, H Asuka, Y Sugioka, T Mochizuki, T Nishiuchi, ...
    Food Safety 11 (3), 41-53 2023

  • Data for proteomic analysis of epidermis of Arabidopsis leaves inoculated with plant pathogenic fungi, Fusarium graminearum.
    Y Sidiq, D Tamaoki, T Nishiuchi
    Journal of Proteome Data and Methods 5, 9 2023

  • Tandem metalloenzymes gate plant cell entry by pathogenic fungi
    B Bissaro, S Kodama, T Nishiuchi, AM Daz-Rovira, H Hage, ...
    Science Advances 8 (51), eade9982 2022

  • Reduced graphene oxide increases cells with enlarged outer membrane of Citrifermentans bremense and exopolysaccharides secretion
    L Meng, L Xie, Y Hirose, T Nishiuchi, N Yoshida
    Biosensors and Bioelectronics 218, 114754 2022

  • Proteomic profiling of plant and pathogen interaction on the leaf epidermis
    Y Sidiq, D Tamaoki, T Nishiuchi
    International Journal of Molecular Sciences 23 (20), 12171 2022

  • Estrogen induces the expression of EBV lytic protein ZEBRA, a marker of poor prognosis in nasopharyngeal carcinoma
    H Dochi, S Kondo, T Murata, M Fukuyo, A Nanbo, K Wakae, WP Jiang, ...
    Cancer science 113 (8), 2862-2877 2022

MOST CITED SCHOLAR PUBLICATIONS

  • High-level overexpression of the Arabidopsis HsfA2 gene confers not only increased themotolerance but also salt/osmotic stress tolerance and enhanced callus
    D Ogawa, K Yamaguchi, T Nishiuchi
    Journal of experimental botany 58 (12), 3373-3383 2007
    Citations: 344

  • A gene encoding a chloroplast omega-3 fatty acid desaturase complements alterations in fatty acid desaturation and chloroplast copy number of the fad7 mutant of Arabidopsis
    K Iba, S Gibson, T Nishiuchi, T Fuse, M Nishimura, V Arondel, S Hugly, ...
    Journal of Biological Chemistry 268 (32), 24099-24105 1993
    Citations: 307

  • Fatty acid desaturation during chilling acclimation is one of the factors involved in conferring low-temperature tolerance to young tobacco leaves
    H Kodama, G Horiguchi, T Nishiuchi, M Nishimura, K Iba
    Plant Physiology 107 (4), 1177-1185 1995
    Citations: 241

  • Rapid and transient activation of transcription of the ERF3 gene by wounding in tobacco leaves: possible involvement of NtWRKYs and autorepression
    T Nishiuchi, H Shinshi, K Suzuki
    Journal of Biological Chemistry 279 (53), 55355-55361 2004
    Citations: 195

  • Wounding changes the spatial expression pattern of the arabidopsis plastid omega-3 fatty acid desaturase gene (FAD7) through different signal transduction pathways.
    T Nishiuchi, T Hamada, H Kodama, K Iba
    The Plant Cell 9 (10), 1701-1712 1997
    Citations: 141

  • Involvement of the osmosensor histidine kinase and osmotic stress-activated protein kinases in the regulation of secondary metabolism in Fusarium graminearum
    N Ochiai, T Tokai, T Nishiuchi, N Takahashi-Ando, M Fujimura, M Kimura
    Biochemical and biophysical research communications 363 (3), 639-644 2007
    Citations: 137

  • Phytotoxic effects of trichothecenes on the growth and morphology of Arabidopsis thaliana
    D Masuda, M Ishida, K Yamaguchi, I Yamaguchi, M Kimura, T Nishiuchi
    Journal of Experimental Botany 58 (7), 1617-1626 2007
    Citations: 125

  • Fusarium Phytotoxin Trichothecenes Have an Elicitor-Like Activity in Arabidopsis thaliana, but the Activity Differed Significantly Among Their Molecular Species
    T Nishiuchi, D Masuda, H Nakashita, K Ichimura, K Shinozaki, S Yoshida, ...
    Molecular plant-microbe interactions 19 (5), 512-520 2006
    Citations: 116

  • Sphingosine-1-phosphate receptor-2 deficiency leads to inhibition of macrophage proinflammatory activities and atherosclerosis in apoE-deficient mice
    F Wang, Y Okamoto, I Inoki, K Yoshioka, W Du, X Qi, N Takuwa, K Gonda, ...
    The Journal of clinical investigation 120 (11), 3979-3995 2010
    Citations: 104

  • Arabidopsis ENHANCED DISEASE RESISTANCE 1 is required for pathogen‐induced expression of plant defensins in nonhost resistance, and acts through interference of
    K Hiruma, T Nishiuchi, T Kato, P Bednarek, T Okuno, P Schulze‐Lefert, ...
    The Plant Journal 67 (6), 980-992 2011
    Citations: 93

  • The chloroplast genome from a lycophyte (microphyllophyte), Selaginella uncinata, has a unique inversion, transpositions and many gene losses
    S Tsuji, K Ueda, T Nishiyama, M Hasebe, S Yoshikawa, A Konagaya, ...
    Journal of plant research 120, 281-290 2007
    Citations: 83

  • Characterization of the chemical diversity of glycosylated mycosporine-like amino acids in the terrestrial cyanobacterium Nostoc commune
    E Nazifi, N Wada, T Asano, T Nishiuchi, Y Iwamuro, S Chinaka, ...
    Journal of Photochemistry and Photobiology B: Biology 142, 154-168 2015
    Citations: 80

  • Visualization of neural activity in insect brains using a conserved immediate early gene, Hr38
    N Fujita, Y Nagata, T Nishiuchi, M Sato, M Iwami, T Kiya
    Current Biology 23 (20), 2063-2070 2013
    Citations: 80

  • Melatonin is a potential drug for the prevention of bone loss during space flight
    M Ikegame, A Hattori, MJ Tabata, K Kitamura, Y Tabuchi, Y Furusawa, ...
    Journal of pineal research 67 (3), e12594 2019
    Citations: 79

  • Transgenic rice plants expressing trichothecene 3-O-acetyltransferase show resistance to the Fusarium phytotoxin deoxynivalenol
    S Ohsato, T Ochiai-Fukuda, T Nishiuchi, N Takahashi-Ando, S Koizumi, ...
    Plant cell reports 26, 531-538 2007
    Citations: 77

  • Tissue-specific and light-responsive regulation of the promoter region of the Arabidopsis thaliana chloroplast ω-3 fatty acid desaturase gene (FAD7)
    T Nishiuchi, T Nakamura, T Abe, H Kodama, M Nishimura, K Iba
    Plant molecular biology 29, 599-609 1995
    Citations: 76

  • Glycosylated porphyra-334 and palythine-threonine from the terrestrial cyanobacterium Nostoc commune
    E Nazifi, N Wada, M Yamaba, T Asano, T Nishiuchi, S Matsugo, ...
    Marine Drugs 11 (9), 3124-3154 2013
    Citations: 73

  • cDNA cloning of a wounding-inducible gene encoding a plastid ω-3 fatty acid desaturase from tobacco
    T Hamada, T Nishiuchi, H Kodama, M Nishimura, K Iba
    Plant and cell physiology 37 (5), 606-611 1996
    Citations: 72

  • Retinoblastoma inactivation induces a protumoral microenvironment via enhanced CCL2 secretion
    F Li, S Kitajima, S Kohno, A Yoshida, S Tange, S Sasaki, N Okada, ...
    Cancer Research 79 (15), 3903-3915 2019
    Citations: 68

  • Caspase-1 protein induces apoptosis-associated speck-like protein containing a caspase recruitment domain (ASC)-mediated necrosis independently of its catalytic activity
    K Motani, H Kushiyama, R Imamura, T Kinoshita, T Nishiuchi, T Suda
    Journal of Biological Chemistry 286 (39), 33963-33972 2011
    Citations: 64