Revised phylogenetic position of Nephrocytium Nägeli (Sphaeropleales, Chlorophyceae), with the description of Nephrocytiaceae fam. nov. and Nephrocytium vieirae sp. nov. Thaís Garcia da Silva, Lenka Štenclová, Naiara Carolina Pereira Archanjo, Inessa Lacativa Bagatini Taxon, 2021 The common planktonic green algal genus Nephrocytium was traditionally assumed to have a close relationship with the genus Oocystis and accordingly has been included in the family Oocystaceae. Although the position of Nephrocytium within the Oocystaceae has differed according to some authors over the years, its inclusion in the family has not been questioned. Following molecular studies of Oocystis, the Oocystaceae (including Nephrocytium) was removed from the class Chlorophyceae and placed in the Trebouxiophyceae. However, recent molecular studies of some of the former Oocystaceae members have returned them to the Chlorophyceae. These studies suggested the placement of Nephrocytium in the Sphaeropleales, but no taxonomic positioning within the order has been determined for the genus. The relocation of Nephrocytium agrees with a strong morphological trait – it lacks the oocystaceaean multilayered ultrastructure of the cell wall. Based on molecular markers (18S rDNA and tufA), and optical and electron microscopy, the present study aimed to establish the relationships of the genus within the Sphaeropleales. The results support the recognition of a new family, the Nephrocytiaceae, to accommodate Nephrocytium. Furthermore, we have carried out a review of previously described Nephrocytium species and based on morphological and molecular data we propose the description of Nephrocytium vieirae sp. nov.
Prevalence and risk factors for bluetongue in the State of São Paulo, Brazil Thaís G. da Silva, Michele S. Lima, Massimo Spedicato, Irene Carmine, Liana Teodori, et al. Veterinary Medicine and Science, 2018 Bluetongue (BT), caused byBluetongue virus(BTV), is a disease that affects ruminants such as cattle, sheep, goats and deer. BTV is transmitted by female midges of the genusCulicoides. In Brazil, information on the prevalence of BTV in cattle is limited, so the objective of this work was to identify BTV serotypes in cattle. The State of São Paulo was divided into seven cattle‐producing regions, and in each of them, 300 cattle farms were randomly selected. One animal from each farm (out of a total of 1,598 farms) was selected and its sera tested by virus neutralization technique against BTV serotypes (1–24 and 26) for determining antibody titre. Moreover, for each sampled farm, an epidemiological questionnaire was submitted to verify the type of cattle production and the zootechnical and sanitary practices carried out, which could be associated with a higher risk of BTV infection. In this study, antibodies (percentage, [95% confidence interval]) were identified against 11 serotypes: BTV‐1 (22.15%, [15.72–27.92]), BTV‐2 (31.03%, [26.65–37.98]), BTV‐3 (18.96%, [12.42–24.90]), BTV‐4 (24.90% [19.41–29.12]), BTV‐9 (6.82%, [1.45–11.72]), BTV‐12 (7.50%, [2.82–12.51]), BTV‐17 (23.90%, [17.35–29.35]), BTV‐19 (10.20%, [4.62–5.56]), BTV‐21 (30.66%, [25.00–36.00]), BTV‐22 (12.14%, [5.91–18.55]), BTV‐26 (57.00%, [51.41–63.59]). In this study, for the first time in Brazil serological evidence of the presence of serotypes BTV‐2, BTV‐9, BTV‐21 and BTV‐26 is reported. The variable ‘new cattle entering herd’ was considered a risk factor for the occurrence of infection (OR = 2.183, 95% CI = 1.6–2.9).
A new species of trichodesmium (cyanobacteria) from freshwaters, Brazil Célia L. Sant'Anna, Watson A. Gama, Thais G. Silva, Armando A.H. Vieira Rodriguesia, 2018 Trichodesmium is a typical planktic genus in which trichomes are disposed either in fascicles or radially in rounded colonies. Based on morphological studies, there are eleven species of Trichodesmium, out of which nine are from marine environments and only two from freshwaters. Trichodesmium is mainly known for its capacity to form blooms and produce toxins in marine tropical and subtropical environments. There is no information about the capacity of the freshwater Trichodesmium species to produce toxins. It was only with molecular studies that the taxonomy of marine Trichodesmium started to be solved. However, up to now, no material has been available for molecular analyses of freshwater species. During the studies of microalgae from São Paulo state, a population resembling Trichodesmium was found in a recreational pond. The analyzed organisms formed fascicles of homocyted and not attenuated trichomes and cells with gas vesicles, a set of features that makes them different from the other freshwater Trichodesmium species. Thus, we have described the species Trichodesmium brasiliense sp. nov. based on material from Brazilian inland water. Also, we have suggested revision of some Brazilian literature citations of T. lacustre and their inclusion in the synonym of this new species.
Genetic diversity of BCoV in Brazilian cattle herds Adeline de Mira Fernandes, Paulo E. Brandão, Michele dos Santos Lima, Maira de Souza Nunes Martins, Thais G. da Silva, et al. Veterinary Medicine and Science, 2018 Bovine coronavirus (BCoV) is one of the main aetiological agents of gastroenteritis in calves, causing significant economic damage to livestock. This study aims to characteriseBCoV genetically on the basis of the N gene. A total of 114 faecal samples from beef and dairy calves with or without clinical symptoms of diarrhoea from five Brazilian states (São Paulo, Minas Gerais, Santa Catarina, Mato Grosso and Bahia) were evaluated between 2008 and 2015 by technique of Semi‐nestedRT‐PCRfor gene N and genealogical analysis. Of the 114 samples analysed, 14.91% (17/114) were positive.BCoV was detected in 22.72% (10/44) of the animals with diarrhoea and in 10% (7/70) of asymptomatic animals.BCoV was identified in calves from rural properties located in all of the regions sampled. Genealogical analysis showed that the Brazilian sequences ofBCoV for the gene which codes for the N protein can be broken down into two distinct clusters, and the samples from this study were closely linked to Asian strains. These results contribute to the molecular characterization ofBCoV in Brazil and are the first report of the circulation ofBCoV in the states of Santa Catarina and Bahia.
Region Growing for Segmenting Green Microalgae Images Vinicius R. P. Borges, Maria Cristina F. de Oliveira, Thais Garcia Silva, Armando Augusto Henriques Vieira, Bernd Hamann IEEE ACM Transactions on Computational Biology and Bioinformatics, 2018
Bovine vaccinia in dairy cattle and suspicion of vesicular disease on milkers in Brazil Thaís Garcia da Silva, Michele dos Santos Lima, Alessandra Marnie Martins Gomes de Castro, Maira de Souza Nunes Martins, Vivian Cardoso Castiglioni, et al. Ciencia Rural, 2018 Bovine vaccinia (BV) is a vesicular disease induced by the Vaccinia virus (VACV) that affects milk production and is an occupational zoonosis. This research had the following objectives: (i) detection of VACV by qPCR in cattle with clinical suspicion of vesicular disease; (ii) symptoms characterization in animals and milkers with clinical suspicion of the disease and virus detection in humans; and (iii) identification of risk factors for infections of VACV in herds from several Brazilian states. A total of 471 bovine epithelial samples from dairy farms, in 15 Brazilian states, were evaluated between 2007 and 2012. The samples were tested by quantitative PCR (qPCR) using SYBR Green® reagents, validated with a lower limit of detection of 100TCID50/50µL (1.7x100 viral particles), and 45.1% of VACV positive samples were detected. Using official forms for epidemiological investigation (FORM-IN), the risk factors for VACV infections in cattle were determined to be farms with a lack of technological facilities (P= 0.029) and the presence of rodents (P= 0.001). There was an effect of seasonality in cattle with a higher occurrence of BV during the dry season. A total of 420 epidemiological questionnaires were applied at public health care centers, where 100% of the milkers had vesicular lesions on their hands (98.1%) and on their arms (6.9%). The most frequent clinical symptoms in humans were: local swelling (74.2%), headache (20.7%), fever (10.4%) and inguinal lymphadenopathy (74.2%). Only 19.98% of milkers aged between 39 and 58 years were seroreactive to VACV and were immunized with the human anti-smallpox vaccine. There was an increase in the frequency of BV in older individuals due to their natural decrease in specific immunity. It has been shown that the implementation of zootechnical management techniques and health planning are important for the prevention of BV in animals and humans.
