Sona Charles

@spices.icar.gov.in

Scientist
ICAR-Indian Institute of Spices Research

EDUCATION

MSc Bioinformatics

RESEARCH INTERESTS

Genomics, Transcriptomics, Network Biology, Bioinformatics, Data Science, Artificial intelligence

207

Scholar Citations

6

Scholar h-index

4

Scholar i10-index

RECENT SCHOLAR PUBLICATIONS

  • Tree based models for classification of membrane and secreted proteins in heart
    S Charles, A Subeesh, J Natarajan
    Journal of Proteins and Proteomics, 1-11 2024

  • Whole genome based identification of BAHD acyltransferase gene involved in piperine biosynthetic pathway in black pepper
    MA Fayad, S Charles, S Shelvy, TE Sheeja, K Sangeetha, UB Angadi, ...
    Journal of Biomolecular Structure and Dynamics, 1-13 2024

  • Transcriptomic Insights Into Heart Development And Cardiovascular Diseases
    S Charles, J Natarajan
    Medicine in Omics, 100026 2023

  • Identification of Key Gene Modules and Novel Transcription Factors in Tetralogy of Fallot Using Machine Learning and Network Topological Features
    JN Sona Charles
    Medinformatics 2023

  • New insights into bacterial Zn homeostasis and molecular architecture of the metal resistome in soil polluted with nano zinc oxide
    D Raghavan, SC Patinharekkara, ST Elampilay, VKI Payatatti, S Charles, ...
    Ecotoxicology and Environmental Safety 263, 115222 2023

  • Soil polluted with nano ZnO reveals unstable bacterial communities and decoupling of taxonomic and functional diversities
    R Dinesh, CP Sreena, TE Sheeja, IPV Kumar, R Praveena, S Charles, ...
    Science of The Total Environment 889, 164285 2023

  • Arbuscular mycorrhizal colonization alters biochemical, molecular defense responses and root exudate composition against Phytophthora capsici infection in black pepper
    C Sarathambal, A Jeevalatha, R Sivaranjani, CN Biju, S Charles, ...
    Rhizosphere 25, 100651 2023

  • Metagenomics indicates abundance of biofilm related genes and horizontal transfer of multidrug resistant genes among bacterial communities in nano zinc oxide polluted soil
    R Dinesh, CP Sreena, TE Sheeja, S Charles, V Srinivasan, V Sajith, ...
    Science of The Total Environment 859, 160032 2023

  • Transcriptomic meta-analysis reveals biomarker pairs and key pathways in Tetralogy of Fallot
    S Charles, J Sreekumar, J Natarajan
    Journal of Bioinformatics and Computational Biology 20 (04), 2240004 2022

  • Omics in tuber crops: Cassava and sweet potato
    SJS Charles
    Omics in Horticultural Crops, 527-543 2022

  • The Applications of Genomics and Transcriptomics Approaches for Biotic Stress Tolerance in Crops
    VM Malathi, MA Lakshmi, S Charles
    Principles and Practices of OMICS and Genome Editing for Crop Improvement 2022

  • Dataset of De Novo hybrid berry transcriptome profiling and characterization of Piper species (Piper nigrum and Piper longum) using Illumina and Nanopore sequencing
    JK George, MA Fayad, S Shelvy, TE Sheeja, SJ Eapen, S Charles, A Rai, ...
    Data in Brief 42 2022

  • Development of EST-SSR markers based on transcriptome and its validation in ginger (Zingiber officinale Rosc.)
    CSM Venugopal Vidya, Duraisamy Prasath, Mohandas Snigdha, Ramasamy Gobu ...
    PlosOne 16 (10), e0259146 2021

  • Analysis of selection signatures reveals important insights into the adaptability of high-altitude Indian sheep breed Changthangi
    NAG Sheikh FirdousAhmadab, ArnavMehrotrab, SonaCharles
    Gene 145809 2021

  • Transcriptomic Approaches in Understanding SARS-CoV-2 Infection
    S Charles, J Natarajan
    Integrated Omics Approaches to Infectious Diseases, 221 2021

  • Integrated regulatory network based on lncRNA-miRNA-mRNA-TF reveals key genes and sub-networks associated with dilated cardiomyopathy
    S Charles, J Natarajan
    Computational Biology and Chemistry 92, 107500 2021

  • Sequence based prediction of Phytophthora- Host interaction using machine learning methods
    SJ Sona Charles
    Great Lakes Bioinformatics Conference 2021 2021

  • Meta-analysis of temporal gene expression profiles in fetal heart development
    CS Natarajan J
    F1000Research 9 (1173), 1173 2020

  • Computational meta-analysis of transcriptome in Tetrology of Fallot reveals dysregulated hubs and pathways
    JN Sona Charles
    Galaxy Community Conference 9 (730) 2020

  • Two way network construction and analysis of mRNA, miRNA and lncRNA reveals critical regulators and regulatory modules in cardiovascular diseases
    JN Sona Charles
    Genes and Genomics 42 (8), 855-867 2020

MOST CITED SCHOLAR PUBLICATIONS

  • Proteomic profiling of high glucose primed monocytes identifies cyclophilin A as a potential secretory marker of inflammation in type 2 diabetes
    S Ramachandran, A Venugopal, S K, S Charles, NSP Chandran, ...
    Proteomics 12 (18), 2808-2821 2012
    Citations: 72

  • Oncogenic microRNAs as biomarkers of oral tumorigenesis and minimal residual disease
    WS Santhi, R Prathibha, S Charles, KG Anurup, G Reshmi, ...
    Oral oncology 49 (6), 567-575 2013
    Citations: 49

  • Development of EST-SSR markers based on transcriptome and its validation in ginger (Zingiber officinale Rosc.)
    CSM Venugopal Vidya, Duraisamy Prasath, Mohandas Snigdha, Ramasamy Gobu ...
    PlosOne 16 (10), e0259146 2021
    Citations: 24

  • Comprehensive patterns in microRNA regulation of transcription factors during tumor metastasis
    G Reshmi, C Sona, MR Pillai
    Journal of cellular biochemistry 112 (9), 2210-2217 2011
    Citations: 13

  • Analysis of selection signatures reveals important insights into the adaptability of high-altitude Indian sheep breed Changthangi
    NAG Sheikh FirdousAhmadab, ArnavMehrotrab, SonaCharles
    Gene 145809 2021
    Citations: 9

  • MethFinder-A software package for prediction of human tissue-specific methylation status of CpG islands
    P James, R Girijadevi, S Charles, MR Pillai
    Bioinformation 9 (1), 61 2013
    Citations: 7

  • Integrated regulatory network based on lncRNA-miRNA-mRNA-TF reveals key genes and sub-networks associated with dilated cardiomyopathy
    S Charles, J Natarajan
    Computational Biology and Chemistry 92, 107500 2021
    Citations: 6

  • OrCa-dB: a complete catalogue of molecular and clinical information in oral carcinogenesis
    G Reshmi, C Sona, J Priyanka, VS Jijith, R Prathibha, R Surya
    Oral oncology 48 (6) 2012
    Citations: 5

  • Metagenomics indicates abundance of biofilm related genes and horizontal transfer of multidrug resistant genes among bacterial communities in nano zinc oxide polluted soil
    R Dinesh, CP Sreena, TE Sheeja, S Charles, V Srinivasan, V Sajith, ...
    Science of The Total Environment 859, 160032 2023
    Citations: 4

  • Two way network construction and analysis of mRNA, miRNA and lncRNA reveals critical regulators and regulatory modules in cardiovascular diseases
    JN Sona Charles
    Genes and Genomics 42 (8), 855-867 2020
    Citations: 4

  • Computer aided gene mining for gingerol biosynthesis
    P James, B Baby, SS Charles, LS Nair, PA Nazeem
    Bioinformation 11 (6), 316 2015
    Citations: 4

  • The Applications of Genomics and Transcriptomics Approaches for Biotic Stress Tolerance in Crops
    VM Malathi, MA Lakshmi, S Charles
    Principles and Practices of OMICS and Genome Editing for Crop Improvement 2022
    Citations: 3

  • Dataset of De Novo hybrid berry transcriptome profiling and characterization of Piper species (Piper nigrum and Piper longum) using Illumina and Nanopore sequencing
    JK George, MA Fayad, S Shelvy, TE Sheeja, SJ Eapen, S Charles, A Rai, ...
    Data in Brief 42 2022
    Citations: 2

  • Whole genome based identification of BAHD acyltransferase gene involved in piperine biosynthetic pathway in black pepper
    MA Fayad, S Charles, S Shelvy, TE Sheeja, K Sangeetha, UB Angadi, ...
    Journal of Biomolecular Structure and Dynamics, 1-13 2024
    Citations: 1

  • Soil polluted with nano ZnO reveals unstable bacterial communities and decoupling of taxonomic and functional diversities
    R Dinesh, CP Sreena, TE Sheeja, IPV Kumar, R Praveena, S Charles, ...
    Science of The Total Environment 889, 164285 2023
    Citations: 1

  • Transcriptomic meta-analysis reveals biomarker pairs and key pathways in Tetralogy of Fallot
    S Charles, J Sreekumar, J Natarajan
    Journal of Bioinformatics and Computational Biology 20 (04), 2240004 2022
    Citations: 1

  • Omics in tuber crops: Cassava and sweet potato
    SJS Charles
    Omics in Horticultural Crops, 527-543 2022
    Citations: 1

  • An in silico phylogenetic analysis and homology modelling of coat protein of banana bract mosaic virus
    PR Jadhav, KB Soni, A Sona, Charles, Swapna
    Journal of Pharmacognosy and Phytochemistry 7 (5), 1957-1962 2018
    Citations: 1