Milind Ratnaparkhe

RESEARCH INTERESTS

Plant Genomics, Bioinformatics, Legumes

RECENT SCHOLAR PUBLICATIONS

A novel chemical property-based, alignment-free scalable feature extraction method for genomic data clustering
R Dwivedi, A Tiwari, N Bharill, M Ratnaparkhe, SK Singh, A Tripathi
Computers and Electrical Engineering 123, 110175 2025



On construction of data preprocessing for real-life SoyLeaf dataset & disease identification using Deep Learning Models
S Gudge, A Tiwari, M Ratnaparkhe, P Jha
Computational Biology and Chemistry, 108417 2025



Dissecting Genetic Architecture of Flowering and Maturity Traits in Soybean Using GWAS in Indian Environment
R Raghuvanshi, G Kumawat, R Kavishwar, S Gupta, A Chitikineni, ...
2025



Enhancing K-means Clustering Performance with a Two-Stage Hybrid Preprocessing Strategy
A Tripathi, A Tiwari, NS Chaudhari, M Ratnaparkhe, R Dwivedi
Arabian Journal for Science and Engineering, 1-20 2024



Best linear unbiased prediction (BLUP)-based models aided in selection of high yielding charcoal rot and yellow mosaic resistant soybean genotypes
PK Amrate, V Nataraj, M Shivakumar, MK Shrivastava, LS Rajput, ...
Genetic Resources and Crop Evolution, 1-19 2024



A taxonomy of unsupervised feature selection methods including their pros, cons, and challenges
R Dwivedi, A Tiwari, N Bharill, M Ratnaparkhe, AK Tiwari
The Journal of Supercomputing 80 (16), 24212-24240 2024



Evaluation of soybean genotypes for resistance to collar rot (Sclerotium rolfsii) under field and glasshouse condition
R Ramteke, LS Rajput, V Nataraj, S Tiwari, M Borah, S Kumar, S Maranna, ...
Tropical Plant Pathology 49 (5), 714-725 2024



Promising resistance donors for yellow mosaic and charcoal rot diseases in soybean (Glycine max, L.)
PK Amrate, V Nataraj, M Shivakumar, M Shrivastava, LS Rajput, ...
2024



Integrating Germplasm Diversity and Omics Science to Enhance Biotic Stress Resistance in Soybean
G Kumawat, R Raghuvanshi, N Vennampally, S Maranna, V Rajesh, ...
Genomics-aided Breeding Strategies for Biotic Stress in Grain Legumes, 327-358 2024



Understanding of G E interactions of yield attributes in soybean MAGIC population and characterization for charcoal rot resistance
S Maranna, V Nataraj, G Kumawat, SP Mehetre, R Reddy, S Jaybhay, ...
Agronomy Journal 116 (3), 1290-1301 2024



Population Genomics of Soybean
MB Ratnaparkhe, R Raghuvanshi, V Nataraj, S Maranna, S Chandra, ...
Population Genomics: Crop Plants, 573-605 2024



An incremental clustering method based on multiple objectives for dynamic data analysis
R Dwivedi, A Tiwari, N Bharill, M Ratnaparkhe, R Soni, R Mahbubani, ...
Multimedia Tools and Applications 83 (13), 38145-38165 2024



A novel apache spark-based 14-dimensional scalable feature extraction approach for the clustering of genomics data
R Dwivedi, A Tiwari, N Bharill, M Ratnaparkhe, P Mogre, P Gadge, ...
The Journal of Supercomputing 80 (3), 3554-3588 2024



Comparative and evolutionary analyses of cyclophilins in Cucumis sativus, Phaseolus vulgaris, and Vitis vinifera.
RMB Yadav N, Bharill N, Gautam Y, Raghuvanshi R, Meda S, Hajela K, Dholakia ...
J Appl Biol Biotech 13 (1), 273-290 2024



Speed Breeding: Rapid Method
R Tripathi, N Agrawal, S Maranna, V Nataraj, S Chandra, G Kumawat, ...
Plant Molecular Breeding in Genomics Era: Applications, 111 2024



In Silico Analysis of Rpp1 Locus-Derived NB-ARC-LRR Domains Reveals Insights into Rust Resistance in Soybean
R Raghuvanshi, Y Gautam, P Soni, N Yadav, RT Shende, R Kavishwar, ...
2024



Prospecting Endophytes for Plant Growth Promotion and Charcoal Rot Disease Management in Soybean
HS Maheshwari, LS Rajput, S Kumar, V Nataraj, M Shivakumar, ...
Available at SSRN 4959778 2024



Allele Mining in Soybean
MB Ratnaparkhe, R Raghuvanshi, R Shroti, V Nataraj, M Shivakumar, ...
Allele Mining for Genomic Designing of Oilseed Crops, 13-51 2024



CRISPR/Cas9-Driven Gene Editing In Soybean: Advancements And Opportunities For Crop Improvement
MBR Rishiraj Raghuvanshi, R T Shende, Yashi Gautam, Neelam Yadav Giriraj ...
Soybean Research 21 (2), 29-47 2024



A Novel Sampled Clustering Algorithm for Rice Phenotypic Data
M Singh, K Ahuja, MB Ratnaparkhe
arXiv preprint arXiv:2312.14920 2023

MOST CITED SCHOLAR PUBLICATIONS

A linkage map of the chickpea (Cicer arietinum L.) genome based on recombinant inbred lines from a C. arietinum C. reticulatum cross: localization of resistance genes for
P Winter, AM Benko-Iseppon, B Httel, M Ratnaparkhe, A Tullu, ...
Theoretical and Applied Genetics 101, 1155-1163 2000
Citations: 413



Inheritance of inter-simple-sequence-repeat polymorphisms and linkage with a fusarium wilt resistance gene in chickpea
MB Ratnaparkhe, DK Santra, A Tullu, FJ Muehlbauer
Theoretical and Applied Genetics 96 (3), 348-353 1998
Citations: 267



Identification and mapping of QTLs conferring resistance to ascochyta blight in chickpea
D Santra, M Ratnaparkhe, FJ Muelhbauer, WJ Kaiser
Crop Science 2000
Citations: 259



Inter-simple-sequence-repeat (ISSR) polymorphisms are useful for finding markers associated with disease resistance gene clusters
M Ratnaparkhe, FJ Muelhbauer
Theoretical and Applied Genetics 1998
Citations: 251



Genetic and physical mapping of the grapevine powdery mildew resistance gene, Run1, using a bacterial artificial chromosome library
CL Barker, T Donald, J Pauquet, MB Ratnaparkhe, A Bouquet, ...
Theoretical and applied genetics 111, 370-377 2005
Citations: 243



Genetic fingerprinting of pigeonpea [Cajanus cajan (L.) Millsp.] and its wild relatives using RAPD markers
MB Ratnaparkhe, VS Gupta, MR Ven Murthy, PK Ranjekar
Theoretical and applied genetics 91, 893-898 1995
Citations: 200



Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean
RW Innes, C Ameline-Torregrosa, T Ashfield, E Cannon, SB Cannon, ...
Plant Physiology 148 (4), 1740-1759 2008
Citations: 161



ICAR Indian Institute of Soybean Research
MB Ratnaparkhe
India 2021
Citations: 85



Evolution of a Complex Disease Resistance Gene Cluster in Diploid Phaseolus and Tetraploid Glycine
T Ashfield, AN Egan, BE Pfeil, NWG Chen, R Podicheti, MB Ratnaparkhe, ...
Plant physiology 159 (1), 336-354 2012
Citations: 79



Comparative analysis of peanut NBS‐LRR gene clusters suggests evolutionary innovation among duplicated domains and erosion of gene microsynteny
MB Ratnaparkhe, X Wang, J Li, RO Compton, LK Rainville, C Lemke, ...
New Phytologist 192 (1), 164-178 2011
Citations: 70



Plant miRNAome and antiviral resistance: a retrospective view and prospective challenges
SV Ramesh, MB Ratnaparkhe, G Kumawat, GK Gupta, SM Husain
Virus Genes 48, 1-14 2014
Citations: 59



WAASB based stability analysis and simultaneous selection for grain yield and early maturity in soybean
V Nataraj, A Bhartiya, CP Singh, HN Devi, MP Deshmukh, P Verghese, ...
Agronomy Journal 2021
Citations: 53



Matita, a new retroelement from peanut: characterization and evolutionary context in the light of the Arachis A–B genome divergence
S Nielen, BS Vidigal, SCM Leal-Bertioli, M Ratnaparkhe, AH Paterson, ...
Molecular Genetics and Genomics 287, 21-38 2012
Citations: 53



Breeding for higher yield, early maturity, wider adaptability and waterlogging tolerance in soybean (Glycine max L.): A case study
S Maranna, V Nataraj, G Kumawat, S Chandra, V Rajesh, R Ramteke, ...
Scientific reports 11 (1), 22853 2021
Citations: 51



Genetics, genomics, and breeding of soybean
K Bilyeu, MB Ratnaparkhe, C Kole
CRC Press 2012
Citations: 50



Replication of nonautonomous retroelements in soybean appears to be both recent and common
A Wawrzynski, T Ashfield, NWG Chen, J Mammadov, A Nguyen, ...
Plant Physiology 148 (4), 1760-1771 2008
Citations: 48



QTLomics in soybean: a way forward for translational genomics and breeding
G Kumawat, S Gupta, MB Ratnaparkhe, S Maranna, GK Satpute
Frontiers in Plant Science 7, 1852 2016
Citations: 47



The repetitive component of the A genome of peanut (Arachis hypogaea) and its role in remodelling intergenic sequence space since its evolutionary divergence from the B genome
DJ Bertioli, B Vidigal, S Nielen, MB Ratnaparkhe, TH Lee, ...
Annals of Botany 112 (3), 545-559 2013
Citations: 39



Omics advances and integrative approaches for the simultaneous improvement of seed oil and protein content in soybean (Glycine max L.)
V Kumar, S Vats, S Kumawat, A Bisht, V Bhatt, SM Shivaraj, G Padalkar, ...
Critical Reviews in Plant Sciences 40 (5), 398-421 2021
Citations: 36



Glycine
MB Ratnaparkhe, RJ Singh, JJ Doyle
Wild crop relatives: genomic and breeding resources: legume crops and 2010
Citations: 34